2022-04-05 04:31:24,250 - INFO - Running RABIES - version: 0.3.5 2022-04-05 04:31:24,250 - INFO - CLI INPUTS: -> rabies_step = preprocess -> plugin = MultiProc -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> bids_dir = /rabies_in -> output_dir = /rabies_out -> bold_only = False -> anat_autobox = True -> bold_autobox = False -> apply_despiking = False -> HMC_option = intraSubjectBOLD -> apply_slice_mc = False -> detect_dummy = False -> data_type = float32 -> debug = False -> bold_inho_cor_method = no_reg -> bold_inho_cor_otsu = 2 -> anat_inho_cor_method = no_reg -> atlas_reg_script = SyN -> fast_commonspace = True -> commonspace_masking = False -> coreg_script = Rigid -> coreg_masking = False -> brain_extraction = False -> nativespace_resampling = inputs_defined -> commonspace_resampling = 0.3x0.3x0.3 -> anatomical_resampling = inputs_defined -> TR = 1 -> apply_STC = False -> tpattern = alt -> anat_template = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Template.nii -> brain_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Mask.nii -> WM_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_WM_bin.nii.gz -> CSF_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> vascular_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> labels = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Brain_Atlases/SIGMA_Anatomical_Atlas/SIGMA_Anatomical_Brain_Atlas_rs.nii 2022-04-05 04:31:24,251 - INFO - INPUT BIDS DATASET: rabies_in/ sub-302104/ sub-302104/ anat/ sub-302104_T2w.nii.gz sub-302104_T2w.json func/ sub-302104_task-rest_bold.nii.gz sub-302104_task-rest_bold.json 2022-04-05 04:31:25,535 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-x435x3ep because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-05 04:31:25,577 - INFO - Generating new fontManager, this may take some time... 2022-04-05 04:37:59,187 - INFO - Running workflow with MultiProc plugin. 2022-04-05 04:37:59,234 - INFO - Workflow main_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-05 04:37:59,281 - INFO - Running in parallel. 2022-04-05 04:37:59,312 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 04:37:59,436 - INFO - [Node] Setting-up "main_wf.bold_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/bold_selectfiles". 2022-04-05 04:37:59,446 - INFO - [Node] Setting-up "main_wf.anat_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/anat_selectfiles". 2022-04-05 04:37:59,453 - INFO - [Node] Running "bold_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-05 04:37:59,453 - INFO - [Node] Running "anat_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-05 04:37:59,461 - INFO - [Node] Setting-up "main_wf.resample_template" in "/rabies_out/main_wf/resample_template". 2022-04-05 04:37:59,484 - INFO - [Node] Running "resample_template" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 04:37:59,526 - INFO - Resampling template to 0.20000000298023224x0.20000000298023224x0.20000000298023224mm dimensions. 2022-04-05 04:37:59,567 - INFO - [Node] Finished "main_wf.anat_selectfiles". 2022-04-05 04:37:59,568 - INFO - [Node] Finished "main_wf.bold_selectfiles". 2022-04-05 04:38:00,450 - INFO - [Node] Finished "main_wf.resample_template". 2022-04-05 04:38:01,316 - INFO - [Job 0] Completed (main_wf.bold_selectfiles). 2022-04-05 04:38:01,318 - INFO - [Job 4] Completed (main_wf.anat_selectfiles). 2022-04-05 04:38:01,319 - INFO - [Job 7] Completed (main_wf.resample_template). 2022-04-05 04:38:01,320 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 04:38:01,417 - INFO - [Node] Setting-up "main_wf.bold_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/bold_convert_to_RAS". 2022-04-05 04:38:01,417 - INFO - [Node] Setting-up "main_wf.anat_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/anat_convert_to_RAS". 2022-04-05 04:38:01,418 - INFO - [Node] Setting-up "main_wf.template_info" in "/rabies_out/main_wf/template_info". 2022-04-05 04:38:01,421 - INFO - [Node] Running "bold_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 04:38:01,422 - INFO - [Node] Running "anat_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 04:38:01,440 - INFO - [Node] Running "template_info" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 04:38:01,513 - INFO - [Node] Finished "main_wf.anat_convert_to_RAS". 2022-04-05 04:38:03,317 - INFO - [Job 5] Completed (main_wf.anat_convert_to_RAS). 2022-04-05 04:38:03,319 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 169.29/169.69, Free processors: 78/80. Currently running: * main_wf.template_info * main_wf.bold_convert_to_RAS 2022-04-05 04:38:03,395 - INFO - [Node] Setting-up "main_wf.anat_autobox" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/anat_autobox". 2022-04-05 04:38:03,400 - INFO - [Node] Running "anat_autobox" ("nipype.interfaces.afni.utils.Autobox"), a CommandLine Interface with command: 3dAutobox -input /rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/anat_autobox/sub-302104_T2w_RAS.nii.gz -prefix sub-302104_T2w_RAS_autobox.nii.gz -npad 1 2022-04-05 04:38:03,647 - INFO - [Node] Finished "main_wf.template_info". 2022-04-05 04:38:03,758 - INFO - [Node] Finished "main_wf.anat_autobox". 2022-04-05 04:38:05,322 - INFO - [Job 41] Completed (main_wf.template_info). 2022-04-05 04:38:05,323 - INFO - [Job 6] Completed (main_wf.anat_autobox). 2022-04-05 04:38:05,324 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.49/169.69, Free processors: 79/80. Currently running: * main_wf.bold_convert_to_RAS 2022-04-05 04:38:05,397 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/anat_inho_cor_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/InhoCorrection". 2022-04-05 04:38:05,421 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-05 04:38:07,325 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.89/169.69, Free processors: 78/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection * main_wf.bold_convert_to_RAS 2022-04-05 04:38:09,170 - INFO - [Node] Finished "main_wf.bold_convert_to_RAS". 2022-04-05 04:38:09,330 - INFO - [Job 1] Completed (main_wf.bold_convert_to_RAS). 2022-04-05 04:38:09,331 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-05 04:38:09,392 - INFO - [Node] Setting-up "main_wf.bold_main_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/gen_bold_ref/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/gen_ref". 2022-04-05 04:38:09,397 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-05 04:38:11,334 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.09/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-05 04:38:38,574 - INFO - [Node] Finished "main_wf.bold_main_wf.gen_bold_ref.gen_ref". 2022-04-05 04:38:39,362 - INFO - [Job 2] Completed (main_wf.bold_main_wf.gen_bold_ref.gen_ref). 2022-04-05 04:38:39,364 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-05 04:38:39,430 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_hmc_wf.ants_MC" in "/rabies_out/main_wf/bold_main_wf/bold_hmc_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/ants_MC". 2022-04-05 04:38:39,438 - INFO - [Node] Running "ants_MC" ("rabies.preprocess_pkg.utils.antsMotionCorr") 2022-04-05 04:38:41,368 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.99/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-05 04:41:27,351 - INFO - [Node] Finished "main_wf.anat_inho_cor_wf.InhoCorrection". 2022-04-05 04:41:27,536 - INFO - [Job 8] Completed (main_wf.anat_inho_cor_wf.InhoCorrection). 2022-04-05 04:41:27,538 - INFO - [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 168.59/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-05 04:41:27,605 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.atlas_reg" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/atlas_reg". 2022-04-05 04:41:27,606 - INFO - [Node] Setting-up "main_wf.anat_datasink" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/anat_datasink". 2022-04-05 04:41:27,611 - INFO - [Node] Running "atlas_reg" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 04:41:27,611 - INFO - [Node] Running "anat_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 04:41:27,617 - INFO - [Node] Finished "main_wf.anat_datasink". 2022-04-05 04:41:27,617 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/anat_inho_cor_diagnosis". 2022-04-05 04:41:27,623 - INFO - [Node] Running "anat_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 04:41:29,540 - INFO - [Job 39] Completed (main_wf.anat_datasink). 2022-04-05 04:41:29,542 - INFO - [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 166.39/169.69, Free processors: 77/80. Currently running: * main_wf.anat_inho_cor_diagnosis * main_wf.commonspace_reg_wf.atlas_reg * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-05 04:41:31,119 - INFO - [Node] Finished "main_wf.anat_inho_cor_diagnosis". 2022-04-05 04:41:31,540 - INFO - [Job 40] Completed (main_wf.anat_inho_cor_diagnosis). 2022-04-05 04:41:31,542 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.59/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.atlas_reg * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-05 04:43:03,605 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.atlas_reg". 2022-04-05 04:43:03,631 - INFO - [Job 9] Completed (main_wf.commonspace_reg_wf.atlas_reg). 2022-04-05 04:43:03,632 - INFO - [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.59/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-05 04:43:03,704 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.prep_commonspace_transform" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/prep_commonspace_transform". 2022-04-05 04:43:03,704 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/PlotOverlap_Native2Atlas". 2022-04-05 04:43:03,710 - INFO - [Node] Running "prep_commonspace_transform" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 04:43:03,713 - INFO - [Node] Running "PlotOverlap_Native2Atlas" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-05 04:43:04,290 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.prep_commonspace_transform". 2022-04-05 04:43:05,633 - INFO - [Job 11] Completed (main_wf.commonspace_reg_wf.prep_commonspace_transform). 2022-04-05 04:43:05,634 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.39/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-05 04:43:05,704 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/bold_main_wf/bold_inho_cor_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/InhoCorrection". 2022-04-05 04:43:05,713 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-05 04:43:06,050 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas". 2022-04-05 04:43:07,635 - INFO - [Job 10] Completed (main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas). 2022-04-05 04:43:07,636 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.99/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-05 04:46:51,125 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_hmc_wf.ants_MC". 2022-04-05 04:46:51,869 - INFO - [Job 3] Completed (main_wf.bold_main_wf.bold_hmc_wf.ants_MC). 2022-04-05 04:46:51,871 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection 2022-04-05 05:36:51,740 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection". 2022-04-05 05:36:53,099 - INFO - [Job 12] Completed (main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection). 2022-04-05 05:36:53,101 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 05:36:53,165 - INFO - [Node] Setting-up "main_wf.bold_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/bold_inho_cor_diagnosis". 2022-04-05 05:36:53,165 - INFO - [Node] Setting-up "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration" in "/rabies_out/main_wf/bold_main_wf/cross_modal_reg_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/EPI_Coregistration". 2022-04-05 05:36:53,189 - INFO - [Node] Running "bold_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 05:36:53,205 - INFO - [Node] Running "EPI_Coregistration" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 05:36:55,105 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.49/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration * main_wf.bold_inho_cor_diagnosis 2022-04-05 05:36:56,356 - INFO - [Node] Finished "main_wf.bold_inho_cor_diagnosis". 2022-04-05 05:36:57,106 - INFO - [Job 13] Completed (main_wf.bold_inho_cor_diagnosis). 2022-04-05 05:36:57,107 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration 2022-04-05 05:37:17,307 - INFO - [Node] Finished "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration". 2022-04-05 05:37:19,133 - INFO - [Job 14] Completed (main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration). 2022-04-05 05:37:19,135 - INFO - [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 05:37:19,186 - INFO - [Node] Setting-up "main_wf.PlotOverlap_EPI2Anat" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/PlotOverlap_EPI2Anat". 2022-04-05 05:37:19,186 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.transforms_datasink" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/transforms_datasink". 2022-04-05 05:37:19,187 - INFO - [Node] Setting-up "main_wf.bold_main_wf.transforms_prep" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/transforms_prep". 2022-04-05 05:37:19,187 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_to_commonspace_transforms" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/bold_to_commonspace_transforms". 2022-04-05 05:37:19,205 - INFO - [Node] Running "transforms_prep" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 05:37:19,205 - INFO - [Node] Running "PlotOverlap_EPI2Anat" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-05 05:37:19,208 - INFO - [Node] Finished "main_wf.bold_main_wf.transforms_prep". 2022-04-05 05:37:19,222 - INFO - [Node] Running "transforms_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 05:37:19,222 - INFO - [Node] Running "bold_to_commonspace_transforms" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 05:37:19,227 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_to_commonspace_transforms". 2022-04-05 05:37:19,234 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.transforms_datasink". 2022-04-05 05:37:21,136 - INFO - [Job 15] Completed (main_wf.commonspace_reg_wf.transforms_datasink). 2022-04-05 05:37:21,137 - INFO - [Job 17] Completed (main_wf.bold_main_wf.bold_to_commonspace_transforms). 2022-04-05 05:37:21,138 - INFO - [Job 26] Completed (main_wf.bold_main_wf.transforms_prep). 2022-04-05 05:37:21,139 - INFO - [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 169.49/169.69, Free processors: 79/80. Currently running: * main_wf.PlotOverlap_EPI2Anat 2022-04-05 05:37:21,168 - INFO - [Node] Finished "main_wf.PlotOverlap_EPI2Anat". 2022-04-05 05:37:21,235 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/bold_transform". 2022-04-05 05:37:21,235 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/bold_transform". 2022-04-05 05:37:21,242 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-05 05:37:21,243 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-05 05:37:23,141 - INFO - [Job 16] Completed (main_wf.PlotOverlap_EPI2Anat). 2022-04-05 05:37:23,142 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.bold_transform * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:42:32,482 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform". 2022-04-05 05:42:33,695 - INFO - [Job 27] Completed (main_wf.bold_main_wf.bold_native_trans_wf.bold_transform). 2022-04-05 05:42:33,697 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:42:33,763 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/merge". 2022-04-05 05:42:33,901 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-05 05:42:35,698 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 164.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.merge * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:43:19,536 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.merge". 2022-04-05 05:43:19,750 - INFO - [Job 28] Completed (main_wf.bold_main_wf.bold_native_trans_wf.merge). 2022-04-05 05:43:19,751 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:43:19,817 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/gen_bold_ref/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/gen_ref". 2022-04-05 05:43:19,823 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-05 05:43:21,753 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:43:52,129 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref". 2022-04-05 05:43:53,785 - INFO - [Job 29] Completed (main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref). 2022-04-05 05:43:53,787 - INFO - [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:43:53,853 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/vascular_mask_EPI". 2022-04-05 05:43:53,853 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/prop_labels_EPI". 2022-04-05 05:43:53,853 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/CSF_mask_EPI". 2022-04-05 05:43:53,867 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/WM_mask_EPI". 2022-04-05 05:43:53,877 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:43:53,878 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:43:53,881 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:43:53,887 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:43:53,891 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/Brain_mask_EPI". 2022-04-05 05:43:53,913 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:43:54,432 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI". 2022-04-05 05:43:54,437 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI". 2022-04-05 05:43:54,438 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI". 2022-04-05 05:43:54,444 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI". 2022-04-05 05:43:54,696 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI". 2022-04-05 05:43:55,789 - INFO - [Job 30] Completed (main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI). 2022-04-05 05:43:55,790 - INFO - [Job 31] Completed (main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI). 2022-04-05 05:43:55,791 - INFO - [Job 32] Completed (main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI). 2022-04-05 05:43:55,792 - INFO - [Job 33] Completed (main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI). 2022-04-05 05:43:55,792 - INFO - [Job 34] Completed (main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI). 2022-04-05 05:43:55,793 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:43:55,881 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds" in "/rabies_out/main_wf/bold_main_wf/bold_confs_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/estimate_confounds". 2022-04-05 05:43:55,895 - INFO - [Node] Running "estimate_confounds" ("rabies.preprocess_pkg.confounds.EstimateConfounds") 2022-04-05 05:43:57,791 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.39/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:46:46,004 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds". 2022-04-05 05:46:47,999 - INFO - [Job 35] Completed (main_wf.bold_main_wf.bold_confs_wf.estimate_confounds). 2022-04-05 05:46:48,000 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:46:48,072 - INFO - [Node] Setting-up "main_wf.confounds_datasink" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/confounds_datasink". 2022-04-05 05:46:48,090 - INFO - [Node] Running "confounds_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 05:46:48,101 - INFO - [Node] Finished "main_wf.confounds_datasink". 2022-04-05 05:46:50,001 - INFO - [Job 36] Completed (main_wf.confounds_datasink). 2022-04-05 05:46:50,002 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 05:50:01,449 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform". 2022-04-05 05:50:02,233 - INFO - [Job 18] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform). 2022-04-05 05:50:02,235 - INFO - [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 05:50:02,303 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/merge". 2022-04-05 05:50:02,451 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-05 05:50:04,237 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge 2022-04-05 05:53:53,771 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge". 2022-04-05 05:53:54,761 - INFO - [Job 19] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.merge). 2022-04-05 05:53:54,763 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 05:53:54,819 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/gen_bold_ref/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/gen_ref". 2022-04-05 05:53:54,819 - INFO - [Node] Setting-up "main_wf.temporal_features" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/temporal_features". 2022-04-05 05:53:54,825 - INFO - [Node] Running "temporal_features" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 05:53:54,832 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-05 05:53:56,764 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.49/169.69, Free processors: 78/80. Currently running: * main_wf.temporal_features * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-05 05:54:16,667 - INFO - [Node] Finished "main_wf.temporal_features". 2022-04-05 05:54:16,807 - INFO - [Job 37] Completed (main_wf.temporal_features). 2022-04-05 05:54:16,808 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-05 05:55:26,472 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref". 2022-04-05 05:55:26,881 - INFO - [Job 20] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref). 2022-04-05 05:55:26,882 - INFO - [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 05:55:26,941 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/prop_labels_EPI". 2022-04-05 05:55:26,941 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/vascular_mask_EPI". 2022-04-05 05:55:26,942 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/CSF_mask_EPI". 2022-04-05 05:55:26,943 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/WM_mask_EPI". 2022-04-05 05:55:26,943 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/Brain_mask_EPI". 2022-04-05 05:55:26,946 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:55:26,948 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:55:26,989 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:55:26,990 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:55:26,991 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 05:55:27,220 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI". 2022-04-05 05:55:27,220 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI". 2022-04-05 05:55:27,220 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI". 2022-04-05 05:55:27,249 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI". 2022-04-05 05:55:27,634 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI". 2022-04-05 05:55:28,886 - INFO - [Job 21] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI). 2022-04-05 05:55:28,886 - INFO - [Job 22] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI). 2022-04-05 05:55:28,887 - INFO - [Job 23] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI). 2022-04-05 05:55:28,888 - INFO - [Job 24] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI). 2022-04-05 05:55:28,888 - INFO - [Job 25] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI). 2022-04-05 05:55:28,890 - INFO - [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 05:55:28,955 - INFO - [Node] Setting-up "main_wf.bold_datasink" in "/rabies_out/main_wf/_scan_info_subject_id302104.sessionNone_split_name_sub-302104_T2w/_run_None/bold_datasink". 2022-04-05 05:55:28,971 - INFO - [Node] Running "bold_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 05:55:29,723 - INFO - [Node] Finished "main_wf.bold_datasink". 2022-04-05 05:55:30,891 - INFO - [Job 38] Completed (main_wf.bold_datasink). 2022-04-05 05:55:30,892 - INFO - [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80.