2022-04-01 16:47:46,247 - INFO - Running RABIES - version: 0.3.5 2022-04-01 16:47:46,247 - INFO - CLI INPUTS: -> rabies_step = preprocess -> plugin = MultiProc -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> bids_dir = /rabies_in -> output_dir = /rabies_out -> bold_only = False -> anat_autobox = True -> bold_autobox = False -> apply_despiking = False -> HMC_option = intraSubjectBOLD -> apply_slice_mc = False -> detect_dummy = False -> data_type = float32 -> debug = False -> bold_inho_cor_method = N4_reg -> bold_inho_cor_otsu = 2 -> anat_inho_cor_method = N4_reg -> atlas_reg_script = SyN -> fast_commonspace = True -> commonspace_masking = False -> coreg_script = Rigid -> coreg_masking = False -> brain_extraction = False -> nativespace_resampling = inputs_defined -> commonspace_resampling = 0.3x0.3x0.3 -> anatomical_resampling = inputs_defined -> TR = 1 -> apply_STC = False -> tpattern = alt -> anat_template = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Template.nii -> brain_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Mask.nii -> WM_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_WM_bin.nii.gz -> CSF_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> vascular_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> labels = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Brain_Atlases/SIGMA_Anatomical_Atlas/SIGMA_Anatomical_Brain_Atlas_rs.nii 2022-04-01 16:47:46,247 - INFO - INPUT BIDS DATASET: rabies_in/ sub-301807/ sub-301807/ anat/ sub-301807_T2w.json sub-301807_T2w.nii.gz func/ sub-301807_task-rest_bold.nii.gz sub-301807_task-rest_bold.json 2022-04-01 16:47:47,326 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-a_cgbbta because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-01 16:47:47,368 - INFO - Generating new fontManager, this may take some time... 2022-04-01 16:54:20,980 - INFO - Running workflow with MultiProc plugin. 2022-04-01 16:54:21,028 - INFO - Workflow main_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-01 16:54:21,077 - INFO - Running in parallel. 2022-04-01 16:54:21,085 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 16:54:21,208 - INFO - [Node] Setting-up "main_wf.bold_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/bold_selectfiles". 2022-04-01 16:54:21,214 - INFO - [Node] Running "bold_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-01 16:54:21,218 - INFO - [Node] Setting-up "main_wf.anat_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/anat_selectfiles". 2022-04-01 16:54:21,223 - INFO - [Node] Running "anat_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-01 16:54:21,227 - INFO - [Node] Setting-up "main_wf.resample_template" in "/rabies_out/main_wf/resample_template". 2022-04-01 16:54:21,235 - INFO - [Node] Running "resample_template" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 16:54:21,277 - INFO - Resampling template to 0.20000000298023224x0.20000000298023224x0.20000000298023224mm dimensions. 2022-04-01 16:54:21,330 - INFO - [Node] Finished "main_wf.bold_selectfiles". 2022-04-01 16:54:21,336 - INFO - [Node] Finished "main_wf.anat_selectfiles". 2022-04-01 16:54:22,043 - INFO - [Node] Finished "main_wf.resample_template". 2022-04-01 16:54:23,088 - INFO - [Job 0] Completed (main_wf.bold_selectfiles). 2022-04-01 16:54:23,090 - INFO - [Job 4] Completed (main_wf.anat_selectfiles). 2022-04-01 16:54:23,090 - INFO - [Job 7] Completed (main_wf.resample_template). 2022-04-01 16:54:23,092 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 16:54:23,187 - INFO - [Node] Setting-up "main_wf.bold_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/bold_convert_to_RAS". 2022-04-01 16:54:23,188 - INFO - [Node] Setting-up "main_wf.anat_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/anat_convert_to_RAS". 2022-04-01 16:54:23,188 - INFO - [Node] Setting-up "main_wf.template_info" in "/rabies_out/main_wf/template_info". 2022-04-01 16:54:23,193 - INFO - [Node] Running "bold_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 16:54:23,193 - INFO - [Node] Running "anat_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 16:54:23,193 - INFO - [Node] Running "template_info" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 16:54:23,284 - INFO - [Node] Finished "main_wf.anat_convert_to_RAS". 2022-04-01 16:54:25,091 - INFO - [Job 5] Completed (main_wf.anat_convert_to_RAS). 2022-04-01 16:54:25,092 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 169.29/169.69, Free processors: 78/80. Currently running: * main_wf.template_info * main_wf.bold_convert_to_RAS 2022-04-01 16:54:25,166 - INFO - [Node] Setting-up "main_wf.anat_autobox" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/anat_autobox". 2022-04-01 16:54:25,170 - INFO - [Node] Running "anat_autobox" ("nipype.interfaces.afni.utils.Autobox"), a CommandLine Interface with command: 3dAutobox -input /rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/anat_autobox/sub-301807_T2w_RAS.nii.gz -prefix sub-301807_T2w_RAS_autobox.nii.gz -npad 1 2022-04-01 16:54:25,334 - INFO - [Node] Finished "main_wf.template_info". 2022-04-01 16:54:25,439 - INFO - [Node] Finished "main_wf.anat_autobox". 2022-04-01 16:54:27,093 - INFO - [Job 41] Completed (main_wf.template_info). 2022-04-01 16:54:27,094 - INFO - [Job 6] Completed (main_wf.anat_autobox). 2022-04-01 16:54:27,095 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.49/169.69, Free processors: 79/80. Currently running: * main_wf.bold_convert_to_RAS 2022-04-01 16:54:27,166 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/anat_inho_cor_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/InhoCorrection". 2022-04-01 16:54:27,172 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-01 16:54:29,096 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.89/169.69, Free processors: 78/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection * main_wf.bold_convert_to_RAS 2022-04-01 16:54:38,397 - INFO - [Node] Finished "main_wf.bold_convert_to_RAS". 2022-04-01 16:54:39,108 - INFO - [Job 1] Completed (main_wf.bold_convert_to_RAS). 2022-04-01 16:54:39,110 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-01 16:54:39,189 - INFO - [Node] Setting-up "main_wf.bold_main_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/gen_bold_ref/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/gen_ref". 2022-04-01 16:54:39,195 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-01 16:54:41,111 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.09/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-01 16:54:58,608 - INFO - [Node] Finished "main_wf.anat_inho_cor_wf.InhoCorrection". 2022-04-01 16:54:59,128 - INFO - [Job 8] Completed (main_wf.anat_inho_cor_wf.InhoCorrection). 2022-04-01 16:54:59,130 - INFO - [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-01 16:54:59,214 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.atlas_reg" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/atlas_reg". 2022-04-01 16:54:59,215 - INFO - [Node] Setting-up "main_wf.anat_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/anat_datasink". 2022-04-01 16:54:59,220 - INFO - [Node] Running "anat_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 16:54:59,221 - INFO - [Node] Running "atlas_reg" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 16:54:59,225 - INFO - [Node] Finished "main_wf.anat_datasink". 2022-04-01 16:54:59,226 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/anat_inho_cor_diagnosis". 2022-04-01 16:54:59,230 - INFO - [Node] Running "anat_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 16:55:01,132 - INFO - [Job 39] Completed (main_wf.anat_datasink). 2022-04-01 16:55:01,135 - INFO - [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 165.49/169.69, Free processors: 77/80. Currently running: * main_wf.anat_inho_cor_diagnosis * main_wf.commonspace_reg_wf.atlas_reg * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-01 16:55:02,636 - INFO - [Node] Finished "main_wf.anat_inho_cor_diagnosis". 2022-04-01 16:55:03,132 - INFO - [Job 40] Completed (main_wf.anat_inho_cor_diagnosis). 2022-04-01 16:55:03,134 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.atlas_reg * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-01 16:55:13,767 - INFO - [Node] Finished "main_wf.bold_main_wf.gen_bold_ref.gen_ref". 2022-04-01 16:55:15,144 - INFO - [Job 2] Completed (main_wf.bold_main_wf.gen_bold_ref.gen_ref). 2022-04-01 16:55:15,145 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.commonspace_reg_wf.atlas_reg 2022-04-01 16:55:15,231 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_hmc_wf.ants_MC" in "/rabies_out/main_wf/bold_main_wf/bold_hmc_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/ants_MC". 2022-04-01 16:55:15,238 - INFO - [Node] Running "ants_MC" ("rabies.preprocess_pkg.utils.antsMotionCorr") 2022-04-01 16:55:17,147 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.59/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC * main_wf.commonspace_reg_wf.atlas_reg 2022-04-01 16:56:40,764 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.atlas_reg". 2022-04-01 16:56:41,228 - INFO - [Job 9] Completed (main_wf.commonspace_reg_wf.atlas_reg). 2022-04-01 16:56:41,230 - INFO - [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.59/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-01 16:56:41,297 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/PlotOverlap_Native2Atlas". 2022-04-01 16:56:41,298 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.prep_commonspace_transform" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/prep_commonspace_transform". 2022-04-01 16:56:41,303 - INFO - [Node] Running "PlotOverlap_Native2Atlas" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-01 16:56:41,305 - INFO - [Node] Running "prep_commonspace_transform" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 16:56:41,848 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.prep_commonspace_transform". 2022-04-01 16:56:43,230 - INFO - [Job 11] Completed (main_wf.commonspace_reg_wf.prep_commonspace_transform). 2022-04-01 16:56:43,232 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.39/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-01 16:56:43,302 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/bold_main_wf/bold_inho_cor_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/InhoCorrection". 2022-04-01 16:56:43,310 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-01 16:56:43,617 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas". 2022-04-01 16:56:45,232 - INFO - [Job 10] Completed (main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas). 2022-04-01 16:56:45,234 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.99/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-01 17:03:54,963 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_hmc_wf.ants_MC". 2022-04-01 17:03:55,664 - INFO - [Job 3] Completed (main_wf.bold_main_wf.bold_hmc_wf.ants_MC). 2022-04-01 17:03:55,666 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection 2022-04-01 17:12:38,317 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection". 2022-04-01 17:12:40,213 - INFO - [Job 12] Completed (main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection). 2022-04-01 17:12:40,214 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 17:12:40,266 - INFO - [Node] Setting-up "main_wf.bold_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/bold_inho_cor_diagnosis". 2022-04-01 17:12:40,266 - INFO - [Node] Setting-up "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration" in "/rabies_out/main_wf/bold_main_wf/cross_modal_reg_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/EPI_Coregistration". 2022-04-01 17:12:40,271 - INFO - [Node] Running "bold_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 17:12:40,272 - INFO - [Node] Running "EPI_Coregistration" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 17:12:42,216 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.49/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration * main_wf.bold_inho_cor_diagnosis 2022-04-01 17:12:43,550 - INFO - [Node] Finished "main_wf.bold_inho_cor_diagnosis". 2022-04-01 17:12:44,217 - INFO - [Job 13] Completed (main_wf.bold_inho_cor_diagnosis). 2022-04-01 17:12:44,218 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration 2022-04-01 17:12:54,401 - INFO - [Node] Finished "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration". 2022-04-01 17:12:56,232 - INFO - [Job 14] Completed (main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration). 2022-04-01 17:12:56,233 - INFO - [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 17:12:56,284 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.transforms_datasink" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/transforms_datasink". 2022-04-01 17:12:56,285 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_to_commonspace_transforms" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/bold_to_commonspace_transforms". 2022-04-01 17:12:56,285 - INFO - [Node] Setting-up "main_wf.bold_main_wf.transforms_prep" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/transforms_prep". 2022-04-01 17:12:56,287 - INFO - [Node] Setting-up "main_wf.PlotOverlap_EPI2Anat" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/PlotOverlap_EPI2Anat". 2022-04-01 17:12:56,289 - INFO - [Node] Running "transforms_prep" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 17:12:56,290 - INFO - [Node] Running "bold_to_commonspace_transforms" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 17:12:56,291 - INFO - [Node] Running "transforms_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 17:12:56,292 - INFO - [Node] Finished "main_wf.bold_main_wf.transforms_prep". 2022-04-01 17:12:56,294 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_to_commonspace_transforms". 2022-04-01 17:12:56,297 - INFO - [Node] Running "PlotOverlap_EPI2Anat" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-01 17:12:56,301 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.transforms_datasink". 2022-04-01 17:12:57,724 - INFO - [Node] Finished "main_wf.PlotOverlap_EPI2Anat". 2022-04-01 17:12:58,237 - INFO - [Job 15] Completed (main_wf.commonspace_reg_wf.transforms_datasink). 2022-04-01 17:12:58,238 - INFO - [Job 16] Completed (main_wf.PlotOverlap_EPI2Anat). 2022-04-01 17:12:58,238 - INFO - [Job 17] Completed (main_wf.bold_main_wf.bold_to_commonspace_transforms). 2022-04-01 17:12:58,239 - INFO - [Job 26] Completed (main_wf.bold_main_wf.transforms_prep). 2022-04-01 17:12:58,240 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 17:12:58,305 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/bold_transform". 2022-04-01 17:12:58,305 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/bold_transform". 2022-04-01 17:12:58,310 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-01 17:12:58,311 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-01 17:13:00,242 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.bold_transform * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:17:56,181 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform". 2022-04-01 17:17:56,765 - INFO - [Job 27] Completed (main_wf.bold_main_wf.bold_native_trans_wf.bold_transform). 2022-04-01 17:17:56,767 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:17:56,831 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/merge". 2022-04-01 17:17:56,968 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-01 17:17:58,768 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 164.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.merge * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:18:45,069 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.merge". 2022-04-01 17:18:46,830 - INFO - [Job 28] Completed (main_wf.bold_main_wf.bold_native_trans_wf.merge). 2022-04-01 17:18:46,831 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:18:46,896 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/gen_bold_ref/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/gen_ref". 2022-04-01 17:18:46,901 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-01 17:18:48,833 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:19:15,069 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref". 2022-04-01 17:19:16,862 - INFO - [Job 29] Completed (main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref). 2022-04-01 17:19:16,863 - INFO - [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:19:16,926 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/prop_labels_EPI". 2022-04-01 17:19:16,927 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/vascular_mask_EPI". 2022-04-01 17:19:16,927 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/CSF_mask_EPI". 2022-04-01 17:19:16,933 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:19:16,933 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:19:16,933 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:19:16,939 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/WM_mask_EPI". 2022-04-01 17:19:16,946 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:19:16,953 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/Brain_mask_EPI". 2022-04-01 17:19:16,960 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:19:17,478 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI". 2022-04-01 17:19:17,483 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI". 2022-04-01 17:19:17,484 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI". 2022-04-01 17:19:17,512 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI". 2022-04-01 17:19:17,743 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI". 2022-04-01 17:19:18,866 - INFO - [Job 30] Completed (main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI). 2022-04-01 17:19:18,867 - INFO - [Job 31] Completed (main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI). 2022-04-01 17:19:18,867 - INFO - [Job 32] Completed (main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI). 2022-04-01 17:19:18,868 - INFO - [Job 33] Completed (main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI). 2022-04-01 17:19:18,869 - INFO - [Job 34] Completed (main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI). 2022-04-01 17:19:18,870 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:19:18,957 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds" in "/rabies_out/main_wf/bold_main_wf/bold_confs_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/estimate_confounds". 2022-04-01 17:19:18,965 - INFO - [Node] Running "estimate_confounds" ("rabies.preprocess_pkg.confounds.EstimateConfounds") 2022-04-01 17:19:20,868 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.39/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:21:53,623 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds". 2022-04-01 17:21:55,078 - INFO - [Job 35] Completed (main_wf.bold_main_wf.bold_confs_wf.estimate_confounds). 2022-04-01 17:21:55,079 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:21:55,144 - INFO - [Node] Setting-up "main_wf.confounds_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/confounds_datasink". 2022-04-01 17:21:55,150 - INFO - [Node] Running "confounds_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 17:21:55,156 - INFO - [Node] Finished "main_wf.confounds_datasink". 2022-04-01 17:21:57,081 - INFO - [Job 36] Completed (main_wf.confounds_datasink). 2022-04-01 17:21:57,082 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 17:25:50,295 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform". 2022-04-01 17:25:51,364 - INFO - [Job 18] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform). 2022-04-01 17:25:51,366 - INFO - [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 17:25:51,426 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/merge". 2022-04-01 17:25:51,560 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-01 17:25:53,371 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge 2022-04-01 17:30:22,586 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge". 2022-04-01 17:30:24,050 - INFO - [Job 19] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.merge). 2022-04-01 17:30:24,051 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 17:30:24,099 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/gen_bold_ref/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/gen_ref". 2022-04-01 17:30:24,099 - INFO - [Node] Setting-up "main_wf.temporal_features" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/temporal_features". 2022-04-01 17:30:24,105 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-01 17:30:24,106 - INFO - [Node] Running "temporal_features" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 17:30:26,057 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.49/169.69, Free processors: 78/80. Currently running: * main_wf.temporal_features * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-01 17:30:46,143 - INFO - [Node] Finished "main_wf.temporal_features". 2022-04-01 17:30:48,109 - INFO - [Job 37] Completed (main_wf.temporal_features). 2022-04-01 17:30:48,110 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-01 17:31:53,982 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref". 2022-04-01 17:31:54,182 - INFO - [Job 20] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref). 2022-04-01 17:31:54,183 - INFO - [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 17:31:54,247 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/prop_labels_EPI". 2022-04-01 17:31:54,248 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/vascular_mask_EPI". 2022-04-01 17:31:54,249 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/CSF_mask_EPI". 2022-04-01 17:31:54,250 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/WM_mask_EPI". 2022-04-01 17:31:54,250 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/Brain_mask_EPI". 2022-04-01 17:31:54,252 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:31:54,253 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:31:54,254 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:31:54,254 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:31:54,254 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 17:31:54,469 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI". 2022-04-01 17:31:54,514 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI". 2022-04-01 17:31:54,514 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI". 2022-04-01 17:31:54,516 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI". 2022-04-01 17:31:54,914 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI". 2022-04-01 17:31:56,187 - INFO - [Job 21] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI). 2022-04-01 17:31:56,188 - INFO - [Job 22] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI). 2022-04-01 17:31:56,188 - INFO - [Job 23] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI). 2022-04-01 17:31:56,189 - INFO - [Job 24] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI). 2022-04-01 17:31:56,190 - INFO - [Job 25] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI). 2022-04-01 17:31:56,191 - INFO - [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 17:31:56,259 - INFO - [Node] Setting-up "main_wf.bold_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301807.sessionNone_split_name_sub-301807_T2w/_run_None/bold_datasink". 2022-04-01 17:31:56,275 - INFO - [Node] Running "bold_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 17:31:57,936 - INFO - [Node] Finished "main_wf.bold_datasink". 2022-04-01 17:31:58,193 - INFO - [Job 38] Completed (main_wf.bold_datasink). 2022-04-01 17:31:58,195 - INFO - [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80.