2022-04-04 23:34:33,971 - INFO - Running RABIES - version: 0.3.5 2022-04-04 23:34:33,971 - INFO - CLI INPUTS: -> rabies_step = preprocess -> plugin = MultiProc -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> bids_dir = /rabies_in -> output_dir = /rabies_out -> bold_only = False -> anat_autobox = True -> bold_autobox = False -> apply_despiking = False -> HMC_option = intraSubjectBOLD -> apply_slice_mc = False -> detect_dummy = False -> data_type = float32 -> debug = False -> bold_inho_cor_method = N4_reg -> bold_inho_cor_otsu = 2 -> anat_inho_cor_method = N4_reg -> atlas_reg_script = SyN -> fast_commonspace = True -> commonspace_masking = False -> coreg_script = Rigid -> coreg_masking = False -> brain_extraction = False -> nativespace_resampling = inputs_defined -> commonspace_resampling = 0.3x0.3x0.3 -> anatomical_resampling = inputs_defined -> TR = 1 -> apply_STC = False -> tpattern = alt -> anat_template = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Template.nii -> brain_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Mask.nii -> WM_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_WM_bin.nii.gz -> CSF_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> vascular_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> labels = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Brain_Atlases/SIGMA_Anatomical_Atlas/SIGMA_Anatomical_Brain_Atlas_rs.nii 2022-04-04 23:34:33,972 - INFO - INPUT BIDS DATASET: rabies_in/ sub-301608/ sub-301608/ info anat/ sub-301608_T2w.nii.gz sub-301608_T2w.json func/ sub-301608_task-rest_bold.json sub-301608_task-rest_bold.nii.gz 2022-04-04 23:34:35,163 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-3zkyxgx9 because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-04 23:34:35,203 - INFO - Generating new fontManager, this may take some time... 2022-04-04 23:41:08,733 - INFO - Running workflow with MultiProc plugin. 2022-04-04 23:41:08,776 - INFO - Workflow main_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-04 23:41:08,821 - INFO - Running in parallel. 2022-04-04 23:41:08,828 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 23:41:08,917 - INFO - [Node] Setting-up "main_wf.bold_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/bold_selectfiles". 2022-04-04 23:41:08,924 - INFO - [Node] Running "bold_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-04 23:41:08,927 - INFO - [Node] Setting-up "main_wf.anat_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/anat_selectfiles". 2022-04-04 23:41:08,935 - INFO - [Node] Setting-up "main_wf.resample_template" in "/rabies_out/main_wf/resample_template". 2022-04-04 23:41:08,943 - INFO - [Node] Running "resample_template" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 23:41:08,957 - INFO - [Node] Running "anat_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-04 23:41:09,009 - INFO - Resampling template to 0.20006248354911804x0.20006248354911804x0.20006248354911804mm dimensions. 2022-04-04 23:41:09,046 - INFO - [Node] Finished "main_wf.bold_selectfiles". 2022-04-04 23:41:09,061 - INFO - [Node] Finished "main_wf.anat_selectfiles". 2022-04-04 23:41:09,791 - INFO - [Node] Finished "main_wf.resample_template". 2022-04-04 23:41:10,832 - INFO - [Job 0] Completed (main_wf.bold_selectfiles). 2022-04-04 23:41:10,834 - INFO - [Job 4] Completed (main_wf.anat_selectfiles). 2022-04-04 23:41:10,834 - INFO - [Job 7] Completed (main_wf.resample_template). 2022-04-04 23:41:10,835 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 23:41:10,934 - INFO - [Node] Setting-up "main_wf.bold_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/bold_convert_to_RAS". 2022-04-04 23:41:10,935 - INFO - [Node] Setting-up "main_wf.anat_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/anat_convert_to_RAS". 2022-04-04 23:41:10,935 - INFO - [Node] Setting-up "main_wf.template_info" in "/rabies_out/main_wf/template_info". 2022-04-04 23:41:10,939 - INFO - [Node] Running "anat_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 23:41:10,939 - INFO - [Node] Running "bold_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 23:41:10,940 - INFO - [Node] Running "template_info" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 23:41:11,285 - INFO - [Node] Finished "main_wf.anat_convert_to_RAS". 2022-04-04 23:41:12,834 - INFO - [Job 5] Completed (main_wf.anat_convert_to_RAS). 2022-04-04 23:41:12,835 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 169.29/169.69, Free processors: 78/80. Currently running: * main_wf.template_info * main_wf.bold_convert_to_RAS 2022-04-04 23:41:12,927 - INFO - [Node] Setting-up "main_wf.anat_autobox" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/anat_autobox". 2022-04-04 23:41:12,933 - INFO - [Node] Running "anat_autobox" ("nipype.interfaces.afni.utils.Autobox"), a CommandLine Interface with command: 3dAutobox -input /rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/anat_autobox/sub-301608_T2w_RAS.nii.gz -prefix sub-301608_T2w_RAS_autobox.nii.gz -npad 1 2022-04-04 23:41:13,109 - INFO - [Node] Finished "main_wf.template_info". 2022-04-04 23:41:13,696 - INFO - [Node] Finished "main_wf.anat_autobox". 2022-04-04 23:41:14,838 - INFO - [Job 41] Completed (main_wf.template_info). 2022-04-04 23:41:14,838 - INFO - [Job 6] Completed (main_wf.anat_autobox). 2022-04-04 23:41:14,840 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.49/169.69, Free processors: 79/80. Currently running: * main_wf.bold_convert_to_RAS 2022-04-04 23:41:14,932 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/anat_inho_cor_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/InhoCorrection". 2022-04-04 23:41:14,938 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-04 23:41:16,840 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.89/169.69, Free processors: 78/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection * main_wf.bold_convert_to_RAS 2022-04-04 23:41:33,960 - INFO - [Node] Finished "main_wf.bold_convert_to_RAS". 2022-04-04 23:41:34,864 - INFO - [Job 1] Completed (main_wf.bold_convert_to_RAS). 2022-04-04 23:41:34,865 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-04 23:41:34,984 - INFO - [Node] Setting-up "main_wf.bold_main_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/gen_bold_ref/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/gen_ref". 2022-04-04 23:41:34,990 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-04 23:41:36,867 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.09/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-04 23:41:52,709 - INFO - [Node] Finished "main_wf.anat_inho_cor_wf.InhoCorrection". 2022-04-04 23:41:52,881 - INFO - [Job 8] Completed (main_wf.anat_inho_cor_wf.InhoCorrection). 2022-04-04 23:41:52,883 - INFO - [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-04 23:41:52,959 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.atlas_reg" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/atlas_reg". 2022-04-04 23:41:52,960 - INFO - [Node] Setting-up "main_wf.anat_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/anat_datasink". 2022-04-04 23:41:52,965 - INFO - [Node] Running "anat_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 23:41:52,966 - INFO - [Node] Running "atlas_reg" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 23:41:52,970 - INFO - [Node] Finished "main_wf.anat_datasink". 2022-04-04 23:41:52,971 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/anat_inho_cor_diagnosis". 2022-04-04 23:41:52,977 - INFO - [Node] Running "anat_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 23:41:54,884 - INFO - [Job 39] Completed (main_wf.anat_datasink). 2022-04-04 23:41:54,886 - INFO - [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 165.49/169.69, Free processors: 77/80. Currently running: * main_wf.anat_inho_cor_diagnosis * main_wf.commonspace_reg_wf.atlas_reg * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-04 23:41:56,605 - INFO - [Node] Finished "main_wf.anat_inho_cor_diagnosis". 2022-04-04 23:41:56,885 - INFO - [Job 40] Completed (main_wf.anat_inho_cor_diagnosis). 2022-04-04 23:41:56,887 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.atlas_reg * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-04 23:42:35,706 - INFO - [Node] Finished "main_wf.bold_main_wf.gen_bold_ref.gen_ref". 2022-04-04 23:42:36,925 - INFO - [Job 2] Completed (main_wf.bold_main_wf.gen_bold_ref.gen_ref). 2022-04-04 23:42:36,927 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.commonspace_reg_wf.atlas_reg 2022-04-04 23:42:36,995 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_hmc_wf.ants_MC" in "/rabies_out/main_wf/bold_main_wf/bold_hmc_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/ants_MC". 2022-04-04 23:42:37,002 - INFO - [Node] Running "ants_MC" ("rabies.preprocess_pkg.utils.antsMotionCorr") 2022-04-04 23:42:38,929 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.59/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC * main_wf.commonspace_reg_wf.atlas_reg 2022-04-04 23:43:28,712 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.atlas_reg". 2022-04-04 23:43:28,975 - INFO - [Job 9] Completed (main_wf.commonspace_reg_wf.atlas_reg). 2022-04-04 23:43:28,977 - INFO - [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.59/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-04 23:43:29,051 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/PlotOverlap_Native2Atlas". 2022-04-04 23:43:29,052 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.prep_commonspace_transform" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/prep_commonspace_transform". 2022-04-04 23:43:29,059 - INFO - [Node] Running "prep_commonspace_transform" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 23:43:29,077 - INFO - [Node] Running "PlotOverlap_Native2Atlas" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-04 23:43:29,599 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.prep_commonspace_transform". 2022-04-04 23:43:30,977 - INFO - [Job 11] Completed (main_wf.commonspace_reg_wf.prep_commonspace_transform). 2022-04-04 23:43:30,979 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.39/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-04 23:43:31,050 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/bold_main_wf/bold_inho_cor_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/InhoCorrection". 2022-04-04 23:43:31,058 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-04 23:43:31,825 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas". 2022-04-04 23:43:32,979 - INFO - [Job 10] Completed (main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas). 2022-04-04 23:43:32,981 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.99/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-04 23:58:42,435 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_hmc_wf.ants_MC". 2022-04-04 23:58:43,926 - INFO - [Job 3] Completed (main_wf.bold_main_wf.bold_hmc_wf.ants_MC). 2022-04-04 23:58:43,927 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection 2022-04-05 00:07:27,874 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection". 2022-04-05 00:07:28,458 - INFO - [Job 12] Completed (main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection). 2022-04-05 00:07:28,459 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 00:07:28,507 - INFO - [Node] Setting-up "main_wf.bold_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/bold_inho_cor_diagnosis". 2022-04-05 00:07:28,508 - INFO - [Node] Setting-up "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration" in "/rabies_out/main_wf/bold_main_wf/cross_modal_reg_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/EPI_Coregistration". 2022-04-05 00:07:28,513 - INFO - [Node] Running "EPI_Coregistration" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 00:07:28,530 - INFO - [Node] Running "bold_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 00:07:30,461 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.49/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration * main_wf.bold_inho_cor_diagnosis 2022-04-05 00:07:31,885 - INFO - [Node] Finished "main_wf.bold_inho_cor_diagnosis". 2022-04-05 00:07:32,463 - INFO - [Job 13] Completed (main_wf.bold_inho_cor_diagnosis). 2022-04-05 00:07:32,464 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration 2022-04-05 00:07:47,389 - INFO - [Node] Finished "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration". 2022-04-05 00:07:48,478 - INFO - [Job 14] Completed (main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration). 2022-04-05 00:07:48,480 - INFO - [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 00:07:48,529 - INFO - [Node] Setting-up "main_wf.PlotOverlap_EPI2Anat" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/PlotOverlap_EPI2Anat". 2022-04-05 00:07:48,529 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.transforms_datasink" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/transforms_datasink". 2022-04-05 00:07:48,530 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_to_commonspace_transforms" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/bold_to_commonspace_transforms". 2022-04-05 00:07:48,530 - INFO - [Node] Setting-up "main_wf.bold_main_wf.transforms_prep" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/transforms_prep". 2022-04-05 00:07:48,534 - INFO - [Node] Running "transforms_prep" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 00:07:48,535 - INFO - [Node] Running "transforms_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 00:07:48,536 - INFO - [Node] Running "bold_to_commonspace_transforms" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 00:07:48,537 - INFO - [Node] Running "PlotOverlap_EPI2Anat" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-05 00:07:48,538 - INFO - [Node] Finished "main_wf.bold_main_wf.transforms_prep". 2022-04-05 00:07:48,540 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_to_commonspace_transforms". 2022-04-05 00:07:48,559 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.transforms_datasink". 2022-04-05 00:07:50,135 - INFO - [Node] Finished "main_wf.PlotOverlap_EPI2Anat". 2022-04-05 00:07:50,480 - INFO - [Job 15] Completed (main_wf.commonspace_reg_wf.transforms_datasink). 2022-04-05 00:07:50,481 - INFO - [Job 16] Completed (main_wf.PlotOverlap_EPI2Anat). 2022-04-05 00:07:50,482 - INFO - [Job 17] Completed (main_wf.bold_main_wf.bold_to_commonspace_transforms). 2022-04-05 00:07:50,482 - INFO - [Job 26] Completed (main_wf.bold_main_wf.transforms_prep). 2022-04-05 00:07:50,483 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 00:07:50,542 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/bold_transform". 2022-04-05 00:07:50,542 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/bold_transform". 2022-04-05 00:07:50,564 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-05 00:07:50,566 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-05 00:07:52,483 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.bold_transform * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 00:20:31,042 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform". 2022-04-05 00:20:32,143 - INFO - [Job 27] Completed (main_wf.bold_main_wf.bold_native_trans_wf.bold_transform). 2022-04-05 00:20:32,147 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 00:20:32,248 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/merge". 2022-04-05 00:20:32,386 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-05 00:20:34,145 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 164.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.merge * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 00:22:40,254 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.merge". 2022-04-05 00:22:40,295 - INFO - [Job 28] Completed (main_wf.bold_main_wf.bold_native_trans_wf.merge). 2022-04-05 00:22:40,296 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 00:22:40,367 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/gen_bold_ref/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/gen_ref". 2022-04-05 00:22:40,372 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-05 00:22:42,299 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 00:23:15,290 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref". 2022-04-05 00:23:16,333 - INFO - [Job 29] Completed (main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref). 2022-04-05 00:23:16,335 - INFO - [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 00:23:16,401 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/prop_labels_EPI". 2022-04-05 00:23:16,401 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/vascular_mask_EPI". 2022-04-05 00:23:16,402 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/CSF_mask_EPI". 2022-04-05 00:23:16,407 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:23:16,412 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/WM_mask_EPI". 2022-04-05 00:23:16,423 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/Brain_mask_EPI". 2022-04-05 00:23:16,439 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:23:16,439 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:23:16,443 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:23:16,443 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:23:16,984 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI". 2022-04-05 00:23:16,989 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI". 2022-04-05 00:23:16,992 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI". 2022-04-05 00:23:16,992 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI". 2022-04-05 00:23:17,264 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI". 2022-04-05 00:23:18,337 - INFO - [Job 30] Completed (main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI). 2022-04-05 00:23:18,338 - INFO - [Job 31] Completed (main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI). 2022-04-05 00:23:18,338 - INFO - [Job 32] Completed (main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI). 2022-04-05 00:23:18,339 - INFO - [Job 33] Completed (main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI). 2022-04-05 00:23:18,340 - INFO - [Job 34] Completed (main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI). 2022-04-05 00:23:18,341 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 00:23:18,430 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds" in "/rabies_out/main_wf/bold_main_wf/bold_confs_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/estimate_confounds". 2022-04-05 00:23:18,439 - INFO - [Node] Running "estimate_confounds" ("rabies.preprocess_pkg.confounds.EstimateConfounds") 2022-04-05 00:23:20,339 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.39/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-05 00:27:21,492 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform". 2022-04-05 00:27:22,652 - INFO - [Job 18] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform). 2022-04-05 00:27:22,653 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 167.39/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds 2022-04-05 00:27:22,714 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/merge". 2022-04-05 00:27:22,832 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-05 00:27:24,658 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 163.39/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds 2022-04-05 00:29:01,238 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds". 2022-04-05 00:29:02,894 - INFO - [Job 35] Completed (main_wf.bold_main_wf.bold_confs_wf.estimate_confounds). 2022-04-05 00:29:02,896 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge 2022-04-05 00:29:02,954 - INFO - [Node] Setting-up "main_wf.confounds_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/confounds_datasink". 2022-04-05 00:29:02,958 - INFO - [Node] Running "confounds_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 00:29:02,973 - INFO - [Node] Finished "main_wf.confounds_datasink". 2022-04-05 00:29:04,901 - INFO - [Job 36] Completed (main_wf.confounds_datasink). 2022-04-05 00:29:04,902 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge 2022-04-05 00:31:47,956 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge". 2022-04-05 00:31:49,347 - INFO - [Job 19] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.merge). 2022-04-05 00:31:49,349 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 00:31:49,396 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/gen_bold_ref/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/gen_ref". 2022-04-05 00:31:49,397 - INFO - [Node] Setting-up "main_wf.temporal_features" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/temporal_features". 2022-04-05 00:31:49,401 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-05 00:31:49,402 - INFO - [Node] Running "temporal_features" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 00:31:51,353 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.49/169.69, Free processors: 78/80. Currently running: * main_wf.temporal_features * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-05 00:32:10,679 - INFO - [Node] Finished "main_wf.temporal_features". 2022-04-05 00:32:11,405 - INFO - [Job 37] Completed (main_wf.temporal_features). 2022-04-05 00:32:11,406 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-05 00:33:15,473 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref". 2022-04-05 00:33:17,473 - INFO - [Job 20] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref). 2022-04-05 00:33:17,474 - INFO - [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 00:33:17,523 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/prop_labels_EPI". 2022-04-05 00:33:17,524 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/vascular_mask_EPI". 2022-04-05 00:33:17,524 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/CSF_mask_EPI". 2022-04-05 00:33:17,525 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/WM_mask_EPI". 2022-04-05 00:33:17,525 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/Brain_mask_EPI". 2022-04-05 00:33:17,528 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:33:17,528 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:33:17,553 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:33:17,554 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:33:17,560 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-05 00:33:17,763 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI". 2022-04-05 00:33:17,803 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI". 2022-04-05 00:33:17,806 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI". 2022-04-05 00:33:17,815 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI". 2022-04-05 00:33:18,275 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI". 2022-04-05 00:33:19,476 - INFO - [Job 21] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI). 2022-04-05 00:33:19,477 - INFO - [Job 22] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI). 2022-04-05 00:33:19,478 - INFO - [Job 23] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI). 2022-04-05 00:33:19,478 - INFO - [Job 24] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI). 2022-04-05 00:33:19,479 - INFO - [Job 25] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI). 2022-04-05 00:33:19,480 - INFO - [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-05 00:33:19,544 - INFO - [Node] Setting-up "main_wf.bold_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301608.sessionNone_split_name_sub-301608_T2w/_run_None/bold_datasink". 2022-04-05 00:33:19,560 - INFO - [Node] Running "bold_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 00:33:21,323 - INFO - [Node] Finished "main_wf.bold_datasink". 2022-04-05 00:33:21,479 - INFO - [Job 38] Completed (main_wf.bold_datasink). 2022-04-05 00:33:21,480 - INFO - [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80.