2022-04-04 07:59:47,180 - INFO - Running RABIES - version: 0.3.5 2022-04-04 07:59:47,180 - INFO - CLI INPUTS: -> rabies_step = preprocess -> plugin = MultiProc -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> bids_dir = /rabies_in -> output_dir = /rabies_out -> bold_only = False -> anat_autobox = True -> bold_autobox = False -> apply_despiking = False -> HMC_option = intraSubjectBOLD -> apply_slice_mc = False -> detect_dummy = False -> data_type = float32 -> debug = False -> bold_inho_cor_method = N4_reg -> bold_inho_cor_otsu = 2 -> anat_inho_cor_method = N4_reg -> atlas_reg_script = SyN -> fast_commonspace = True -> commonspace_masking = False -> coreg_script = Rigid -> coreg_masking = False -> brain_extraction = False -> nativespace_resampling = inputs_defined -> commonspace_resampling = 0.3x0.3x0.3 -> anatomical_resampling = inputs_defined -> TR = 1 -> apply_STC = False -> tpattern = alt -> anat_template = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Template.nii -> brain_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Mask.nii -> WM_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_WM_bin.nii.gz -> CSF_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> vascular_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> labels = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Brain_Atlases/SIGMA_Anatomical_Atlas/SIGMA_Anatomical_Brain_Atlas_rs.nii 2022-04-04 07:59:47,180 - INFO - INPUT BIDS DATASET: rabies_in/ sub-301606/ sub-301606/ info anat/ sub-301606_T2w.json sub-301606_T2w.nii.gz func/ sub-301606_task-rest_bold.json sub-301606_task-rest_bold.nii.gz 2022-04-04 07:59:48,281 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-ok4spv_n because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-04 07:59:48,321 - INFO - Generating new fontManager, this may take some time... 2022-04-04 08:06:21,851 - INFO - Running workflow with MultiProc plugin. 2022-04-04 08:06:21,894 - INFO - Workflow main_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-04 08:06:21,942 - INFO - Running in parallel. 2022-04-04 08:06:21,949 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 08:06:22,041 - INFO - [Node] Setting-up "main_wf.bold_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/bold_selectfiles". 2022-04-04 08:06:22,047 - INFO - [Node] Running "bold_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-04 08:06:22,050 - INFO - [Node] Setting-up "main_wf.anat_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/anat_selectfiles". 2022-04-04 08:06:22,057 - INFO - [Node] Running "anat_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-04 08:06:22,058 - INFO - [Node] Setting-up "main_wf.resample_template" in "/rabies_out/main_wf/resample_template". 2022-04-04 08:06:22,065 - INFO - [Node] Running "resample_template" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:06:22,144 - INFO - Resampling template to 0.199942484498024x0.199942484498024x0.199942484498024mm dimensions. 2022-04-04 08:06:22,157 - INFO - [Node] Finished "main_wf.bold_selectfiles". 2022-04-04 08:06:22,160 - INFO - [Node] Finished "main_wf.anat_selectfiles". 2022-04-04 08:06:22,988 - INFO - [Node] Finished "main_wf.resample_template". 2022-04-04 08:06:23,953 - INFO - [Job 0] Completed (main_wf.bold_selectfiles). 2022-04-04 08:06:23,955 - INFO - [Job 4] Completed (main_wf.anat_selectfiles). 2022-04-04 08:06:23,956 - INFO - [Job 7] Completed (main_wf.resample_template). 2022-04-04 08:06:23,957 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 08:06:24,037 - INFO - [Node] Setting-up "main_wf.bold_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/bold_convert_to_RAS". 2022-04-04 08:06:24,037 - INFO - [Node] Setting-up "main_wf.anat_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/anat_convert_to_RAS". 2022-04-04 08:06:24,038 - INFO - [Node] Setting-up "main_wf.template_info" in "/rabies_out/main_wf/template_info". 2022-04-04 08:06:24,042 - INFO - [Node] Running "anat_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:06:24,043 - INFO - [Node] Running "bold_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:06:24,043 - INFO - [Node] Running "template_info" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:06:24,309 - INFO - [Node] Finished "main_wf.anat_convert_to_RAS". 2022-04-04 08:06:25,957 - INFO - [Job 5] Completed (main_wf.anat_convert_to_RAS). 2022-04-04 08:06:25,958 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 169.29/169.69, Free processors: 78/80. Currently running: * main_wf.template_info * main_wf.bold_convert_to_RAS 2022-04-04 08:06:26,024 - INFO - [Node] Setting-up "main_wf.anat_autobox" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/anat_autobox". 2022-04-04 08:06:26,031 - INFO - [Node] Running "anat_autobox" ("nipype.interfaces.afni.utils.Autobox"), a CommandLine Interface with command: 3dAutobox -input /rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/anat_autobox/sub-301606_T2w_RAS.nii.gz -prefix sub-301606_T2w_RAS_autobox.nii.gz -npad 1 2022-04-04 08:06:26,048 - INFO - [Node] Finished "main_wf.template_info". 2022-04-04 08:06:26,677 - INFO - [Node] Finished "main_wf.anat_autobox". 2022-04-04 08:06:27,963 - INFO - [Job 41] Completed (main_wf.template_info). 2022-04-04 08:06:27,964 - INFO - [Job 6] Completed (main_wf.anat_autobox). 2022-04-04 08:06:27,965 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.49/169.69, Free processors: 79/80. Currently running: * main_wf.bold_convert_to_RAS 2022-04-04 08:06:28,032 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/anat_inho_cor_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/InhoCorrection". 2022-04-04 08:06:28,038 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-04 08:06:29,966 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.89/169.69, Free processors: 78/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection * main_wf.bold_convert_to_RAS 2022-04-04 08:06:46,538 - INFO - [Node] Finished "main_wf.bold_convert_to_RAS". 2022-04-04 08:06:47,988 - INFO - [Job 1] Completed (main_wf.bold_convert_to_RAS). 2022-04-04 08:06:47,989 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-04 08:06:48,059 - INFO - [Node] Setting-up "main_wf.bold_main_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/gen_bold_ref/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/gen_ref". 2022-04-04 08:06:48,065 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-04 08:06:49,990 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.09/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-04 08:07:05,908 - INFO - [Node] Finished "main_wf.anat_inho_cor_wf.InhoCorrection". 2022-04-04 08:07:06,005 - INFO - [Job 8] Completed (main_wf.anat_inho_cor_wf.InhoCorrection). 2022-04-04 08:07:06,007 - INFO - [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-04 08:07:06,085 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.atlas_reg" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/atlas_reg". 2022-04-04 08:07:06,086 - INFO - [Node] Setting-up "main_wf.anat_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/anat_datasink". 2022-04-04 08:07:06,094 - INFO - [Node] Running "atlas_reg" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:07:06,094 - INFO - [Node] Running "anat_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 08:07:06,097 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/anat_inho_cor_diagnosis". 2022-04-04 08:07:06,099 - INFO - [Node] Finished "main_wf.anat_datasink". 2022-04-04 08:07:06,111 - INFO - [Node] Running "anat_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:07:08,008 - INFO - [Job 39] Completed (main_wf.anat_datasink). 2022-04-04 08:07:08,010 - INFO - [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 165.49/169.69, Free processors: 77/80. Currently running: * main_wf.anat_inho_cor_diagnosis * main_wf.commonspace_reg_wf.atlas_reg * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-04 08:07:09,882 - INFO - [Node] Finished "main_wf.anat_inho_cor_diagnosis". 2022-04-04 08:07:10,009 - INFO - [Job 40] Completed (main_wf.anat_inho_cor_diagnosis). 2022-04-04 08:07:10,011 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.atlas_reg * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-04 08:07:50,074 - INFO - [Node] Finished "main_wf.bold_main_wf.gen_bold_ref.gen_ref". 2022-04-04 08:07:52,053 - INFO - [Job 2] Completed (main_wf.bold_main_wf.gen_bold_ref.gen_ref). 2022-04-04 08:07:52,055 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.commonspace_reg_wf.atlas_reg 2022-04-04 08:07:52,227 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_hmc_wf.ants_MC" in "/rabies_out/main_wf/bold_main_wf/bold_hmc_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/ants_MC". 2022-04-04 08:07:52,236 - INFO - [Node] Running "ants_MC" ("rabies.preprocess_pkg.utils.antsMotionCorr") 2022-04-04 08:07:54,054 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.59/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC * main_wf.commonspace_reg_wf.atlas_reg 2022-04-04 08:08:41,663 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.atlas_reg". 2022-04-04 08:08:42,097 - INFO - [Job 9] Completed (main_wf.commonspace_reg_wf.atlas_reg). 2022-04-04 08:08:42,099 - INFO - [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.59/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-04 08:08:42,169 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/PlotOverlap_Native2Atlas". 2022-04-04 08:08:42,169 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.prep_commonspace_transform" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/prep_commonspace_transform". 2022-04-04 08:08:42,212 - INFO - [Node] Running "PlotOverlap_Native2Atlas" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-04 08:08:42,212 - INFO - [Node] Running "prep_commonspace_transform" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:08:42,767 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.prep_commonspace_transform". 2022-04-04 08:08:44,099 - INFO - [Job 11] Completed (main_wf.commonspace_reg_wf.prep_commonspace_transform). 2022-04-04 08:08:44,101 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.39/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-04 08:08:44,164 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/bold_main_wf/bold_inho_cor_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/InhoCorrection". 2022-04-04 08:08:44,171 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-04 08:08:44,594 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas". 2022-04-04 08:08:46,101 - INFO - [Job 10] Completed (main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas). 2022-04-04 08:08:46,103 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.99/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-04 08:23:41,810 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_hmc_wf.ants_MC". 2022-04-04 08:23:43,006 - INFO - [Job 3] Completed (main_wf.bold_main_wf.bold_hmc_wf.ants_MC). 2022-04-04 08:23:43,010 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection 2022-04-04 08:31:29,943 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection". 2022-04-04 08:31:31,490 - INFO - [Job 12] Completed (main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection). 2022-04-04 08:31:31,492 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 08:31:31,541 - INFO - [Node] Setting-up "main_wf.bold_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/bold_inho_cor_diagnosis". 2022-04-04 08:31:31,541 - INFO - [Node] Setting-up "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration" in "/rabies_out/main_wf/bold_main_wf/cross_modal_reg_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/EPI_Coregistration". 2022-04-04 08:31:31,547 - INFO - [Node] Running "bold_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:31:31,548 - INFO - [Node] Running "EPI_Coregistration" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:31:33,493 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.49/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration * main_wf.bold_inho_cor_diagnosis 2022-04-04 08:31:34,862 - INFO - [Node] Finished "main_wf.bold_inho_cor_diagnosis". 2022-04-04 08:31:35,496 - INFO - [Job 13] Completed (main_wf.bold_inho_cor_diagnosis). 2022-04-04 08:31:35,497 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration 2022-04-04 08:31:49,936 - INFO - [Node] Finished "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration". 2022-04-04 08:31:51,516 - INFO - [Job 14] Completed (main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration). 2022-04-04 08:31:51,517 - INFO - [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 08:31:51,579 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.transforms_datasink" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/transforms_datasink". 2022-04-04 08:31:51,579 - INFO - [Node] Setting-up "main_wf.PlotOverlap_EPI2Anat" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/PlotOverlap_EPI2Anat". 2022-04-04 08:31:51,579 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_to_commonspace_transforms" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/bold_to_commonspace_transforms". 2022-04-04 08:31:51,579 - INFO - [Node] Setting-up "main_wf.bold_main_wf.transforms_prep" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/transforms_prep". 2022-04-04 08:31:51,583 - INFO - [Node] Running "bold_to_commonspace_transforms" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:31:51,583 - INFO - [Node] Running "transforms_prep" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:31:51,586 - INFO - [Node] Running "transforms_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 08:31:51,587 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_to_commonspace_transforms". 2022-04-04 08:31:51,587 - INFO - [Node] Finished "main_wf.bold_main_wf.transforms_prep". 2022-04-04 08:31:51,589 - INFO - [Node] Running "PlotOverlap_EPI2Anat" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-04 08:31:51,594 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.transforms_datasink". 2022-04-04 08:31:53,137 - INFO - [Node] Finished "main_wf.PlotOverlap_EPI2Anat". 2022-04-04 08:31:53,519 - INFO - [Job 15] Completed (main_wf.commonspace_reg_wf.transforms_datasink). 2022-04-04 08:31:53,520 - INFO - [Job 16] Completed (main_wf.PlotOverlap_EPI2Anat). 2022-04-04 08:31:53,521 - INFO - [Job 17] Completed (main_wf.bold_main_wf.bold_to_commonspace_transforms). 2022-04-04 08:31:53,521 - INFO - [Job 26] Completed (main_wf.bold_main_wf.transforms_prep). 2022-04-04 08:31:53,522 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 08:31:53,586 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/bold_transform". 2022-04-04 08:31:53,586 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/bold_transform". 2022-04-04 08:31:53,592 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-04 08:31:53,593 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-04 08:31:55,526 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.bold_transform * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-04 08:44:22,999 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform". 2022-04-04 08:44:23,214 - INFO - [Job 27] Completed (main_wf.bold_main_wf.bold_native_trans_wf.bold_transform). 2022-04-04 08:44:23,216 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-04 08:44:23,284 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/merge". 2022-04-04 08:44:23,411 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-04 08:44:25,217 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 164.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.merge * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-04 08:46:26,695 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.merge". 2022-04-04 08:46:27,361 - INFO - [Job 28] Completed (main_wf.bold_main_wf.bold_native_trans_wf.merge). 2022-04-04 08:46:27,362 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-04 08:46:27,425 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/gen_bold_ref/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/gen_ref". 2022-04-04 08:46:27,430 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-04 08:46:29,364 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-04 08:47:04,388 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref". 2022-04-04 08:47:05,404 - INFO - [Job 29] Completed (main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref). 2022-04-04 08:47:05,405 - INFO - [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-04 08:47:05,471 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/prop_labels_EPI". 2022-04-04 08:47:05,472 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/vascular_mask_EPI". 2022-04-04 08:47:05,472 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/CSF_mask_EPI". 2022-04-04 08:47:05,478 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:47:05,478 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:47:05,482 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/WM_mask_EPI". 2022-04-04 08:47:05,489 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:47:05,495 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/Brain_mask_EPI". 2022-04-04 08:47:05,529 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:47:05,530 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:47:06,017 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI". 2022-04-04 08:47:06,020 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI". 2022-04-04 08:47:06,020 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI". 2022-04-04 08:47:06,030 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI". 2022-04-04 08:47:06,293 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI". 2022-04-04 08:47:07,408 - INFO - [Job 30] Completed (main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI). 2022-04-04 08:47:07,409 - INFO - [Job 31] Completed (main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI). 2022-04-04 08:47:07,409 - INFO - [Job 32] Completed (main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI). 2022-04-04 08:47:07,410 - INFO - [Job 33] Completed (main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI). 2022-04-04 08:47:07,411 - INFO - [Job 34] Completed (main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI). 2022-04-04 08:47:07,412 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-04 08:47:07,492 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds" in "/rabies_out/main_wf/bold_main_wf/bold_confs_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/estimate_confounds". 2022-04-04 08:47:07,499 - INFO - [Node] Running "estimate_confounds" ("rabies.preprocess_pkg.confounds.EstimateConfounds") 2022-04-04 08:47:09,410 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.39/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-04 08:51:18,263 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform". 2022-04-04 08:51:19,723 - INFO - [Job 18] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform). 2022-04-04 08:51:19,724 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 167.39/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds 2022-04-04 08:51:19,816 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/merge". 2022-04-04 08:51:19,934 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-04 08:51:21,726 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 163.39/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds 2022-04-04 08:52:54,630 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds". 2022-04-04 08:52:55,933 - INFO - [Job 35] Completed (main_wf.bold_main_wf.bold_confs_wf.estimate_confounds). 2022-04-04 08:52:55,935 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge 2022-04-04 08:52:55,991 - INFO - [Node] Setting-up "main_wf.confounds_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/confounds_datasink". 2022-04-04 08:52:55,996 - INFO - [Node] Running "confounds_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 08:52:56,001 - INFO - [Node] Finished "main_wf.confounds_datasink". 2022-04-04 08:52:57,938 - INFO - [Job 36] Completed (main_wf.confounds_datasink). 2022-04-04 08:52:57,939 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge 2022-04-04 08:55:42,998 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge". 2022-04-04 08:55:44,392 - INFO - [Job 19] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.merge). 2022-04-04 08:55:44,394 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 08:55:44,450 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/gen_bold_ref/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/gen_ref". 2022-04-04 08:55:44,450 - INFO - [Node] Setting-up "main_wf.temporal_features" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/temporal_features". 2022-04-04 08:55:44,455 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-04 08:55:44,455 - INFO - [Node] Running "temporal_features" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 08:55:46,398 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.49/169.69, Free processors: 78/80. Currently running: * main_wf.temporal_features * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-04 08:56:05,749 - INFO - [Node] Finished "main_wf.temporal_features". 2022-04-04 08:56:06,454 - INFO - [Job 37] Completed (main_wf.temporal_features). 2022-04-04 08:56:06,456 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-04 08:57:09,013 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref". 2022-04-04 08:57:10,521 - INFO - [Job 20] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref). 2022-04-04 08:57:10,522 - INFO - [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 08:57:10,586 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/prop_labels_EPI". 2022-04-04 08:57:10,587 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/vascular_mask_EPI". 2022-04-04 08:57:10,587 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/CSF_mask_EPI". 2022-04-04 08:57:10,588 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/Brain_mask_EPI". 2022-04-04 08:57:10,588 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/WM_mask_EPI". 2022-04-04 08:57:10,591 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:57:10,592 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:57:10,627 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:57:10,628 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:57:10,636 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-04 08:57:10,830 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI". 2022-04-04 08:57:10,873 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI". 2022-04-04 08:57:10,875 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI". 2022-04-04 08:57:10,879 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI". 2022-04-04 08:57:11,289 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI". 2022-04-04 08:57:12,526 - INFO - [Job 21] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI). 2022-04-04 08:57:12,527 - INFO - [Job 22] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI). 2022-04-04 08:57:12,528 - INFO - [Job 23] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI). 2022-04-04 08:57:12,528 - INFO - [Job 24] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI). 2022-04-04 08:57:12,529 - INFO - [Job 25] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI). 2022-04-04 08:57:12,530 - INFO - [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-04 08:57:12,594 - INFO - [Node] Setting-up "main_wf.bold_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301606.sessionNone_split_name_sub-301606_T2w/_run_None/bold_datasink". 2022-04-04 08:57:12,609 - INFO - [Node] Running "bold_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 08:57:14,272 - INFO - [Node] Finished "main_wf.bold_datasink". 2022-04-04 08:57:14,530 - INFO - [Job 38] Completed (main_wf.bold_datasink). 2022-04-04 08:57:14,531 - INFO - [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80.