2022-04-01 13:48:13,053 - INFO - Running RABIES - version: 0.3.5 2022-04-01 13:48:13,053 - INFO - CLI INPUTS: -> rabies_step = preprocess -> plugin = MultiProc -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> bids_dir = /rabies_in -> output_dir = /rabies_out -> bold_only = False -> anat_autobox = True -> bold_autobox = False -> apply_despiking = False -> HMC_option = intraSubjectBOLD -> apply_slice_mc = False -> detect_dummy = False -> data_type = float32 -> debug = False -> bold_inho_cor_method = N4_reg -> bold_inho_cor_otsu = 2 -> anat_inho_cor_method = N4_reg -> atlas_reg_script = SyN -> fast_commonspace = True -> commonspace_masking = False -> coreg_script = Rigid -> coreg_masking = False -> brain_extraction = False -> nativespace_resampling = inputs_defined -> commonspace_resampling = 0.3x0.3x0.3 -> anatomical_resampling = inputs_defined -> TR = 1 -> apply_STC = False -> tpattern = alt -> anat_template = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Template.nii -> brain_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_Brain_Mask.nii -> WM_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_WM_bin.nii.gz -> CSF_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> vascular_mask = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Anatomical_Imaging/SIGMA_Rat_Anatomical_InVivo_Template/SIGMA_InVivo_CSF_bin.nii.gz -> labels = /template/SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1/SIGMA_Rat_Brain_Atlases/SIGMA_Anatomical_Atlas/SIGMA_Anatomical_Brain_Atlas_rs.nii 2022-04-01 13:48:13,053 - INFO - INPUT BIDS DATASET: rabies_in/ sub-301109/ sub-301109/ anat/ sub-301109_T2w.nii.gz sub-301109_T2w.json func/ sub-301109_task-rest_bold.json sub-301109_task-rest_bold.nii.gz 2022-04-01 13:48:14,151 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-dp26hirt because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-01 13:48:14,193 - INFO - Generating new fontManager, this may take some time... 2022-04-01 13:54:47,786 - INFO - Running workflow with MultiProc plugin. 2022-04-01 13:54:47,831 - INFO - Workflow main_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-01 13:54:47,878 - INFO - Running in parallel. 2022-04-01 13:54:47,886 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 13:54:47,986 - INFO - [Node] Setting-up "main_wf.bold_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/bold_selectfiles". 2022-04-01 13:54:47,996 - INFO - [Node] Setting-up "main_wf.anat_selectfiles" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/anat_selectfiles". 2022-04-01 13:54:48,004 - INFO - [Node] Setting-up "main_wf.resample_template" in "/rabies_out/main_wf/resample_template". 2022-04-01 13:54:48,008 - INFO - [Node] Running "bold_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-01 13:54:48,008 - INFO - [Node] Running "anat_selectfiles" ("rabies.preprocess_pkg.utils.BIDSDataGraber") 2022-04-01 13:54:48,009 - INFO - [Node] Running "resample_template" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 13:54:48,050 - INFO - Resampling template to 0.20000000298023224x0.20000000298023224x0.20000000298023224mm dimensions. 2022-04-01 13:54:48,125 - INFO - [Node] Finished "main_wf.bold_selectfiles". 2022-04-01 13:54:48,127 - INFO - [Node] Finished "main_wf.anat_selectfiles". 2022-04-01 13:54:48,815 - INFO - [Node] Finished "main_wf.resample_template". 2022-04-01 13:54:49,891 - INFO - [Job 0] Completed (main_wf.bold_selectfiles). 2022-04-01 13:54:49,893 - INFO - [Job 4] Completed (main_wf.anat_selectfiles). 2022-04-01 13:54:49,894 - INFO - [Job 7] Completed (main_wf.resample_template). 2022-04-01 13:54:49,895 - INFO - [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 13:54:49,992 - INFO - [Node] Setting-up "main_wf.bold_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/bold_convert_to_RAS". 2022-04-01 13:54:49,993 - INFO - [Node] Setting-up "main_wf.anat_convert_to_RAS" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/anat_convert_to_RAS". 2022-04-01 13:54:49,993 - INFO - [Node] Setting-up "main_wf.template_info" in "/rabies_out/main_wf/template_info". 2022-04-01 13:54:49,997 - INFO - [Node] Running "anat_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 13:54:49,998 - INFO - [Node] Running "template_info" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 13:54:49,998 - INFO - [Node] Running "bold_convert_to_RAS" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 13:54:50,129 - INFO - [Node] Finished "main_wf.anat_convert_to_RAS". 2022-04-01 13:54:51,892 - INFO - [Job 5] Completed (main_wf.anat_convert_to_RAS). 2022-04-01 13:54:51,894 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 169.29/169.69, Free processors: 78/80. Currently running: * main_wf.template_info * main_wf.bold_convert_to_RAS 2022-04-01 13:54:51,966 - INFO - [Node] Setting-up "main_wf.anat_autobox" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/anat_autobox". 2022-04-01 13:54:51,972 - INFO - [Node] Running "anat_autobox" ("nipype.interfaces.afni.utils.Autobox"), a CommandLine Interface with command: 3dAutobox -input /rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/anat_autobox/sub-301109_T2w_RAS.nii.gz -prefix sub-301109_T2w_RAS_autobox.nii.gz -npad 1 2022-04-01 13:54:52,087 - INFO - [Node] Finished "main_wf.template_info". 2022-04-01 13:54:52,234 - INFO - [Node] Finished "main_wf.anat_autobox". 2022-04-01 13:54:53,897 - INFO - [Job 41] Completed (main_wf.template_info). 2022-04-01 13:54:53,898 - INFO - [Job 6] Completed (main_wf.anat_autobox). 2022-04-01 13:54:53,899 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.49/169.69, Free processors: 79/80. Currently running: * main_wf.bold_convert_to_RAS 2022-04-01 13:54:53,985 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/anat_inho_cor_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/InhoCorrection". 2022-04-01 13:54:53,990 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-01 13:54:55,900 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.89/169.69, Free processors: 78/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection * main_wf.bold_convert_to_RAS 2022-04-01 13:54:57,920 - INFO - [Node] Finished "main_wf.bold_convert_to_RAS". 2022-04-01 13:54:59,908 - INFO - [Job 1] Completed (main_wf.bold_convert_to_RAS). 2022-04-01 13:54:59,910 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-01 13:55:00,002 - INFO - [Node] Setting-up "main_wf.bold_main_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/gen_bold_ref/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/gen_ref". 2022-04-01 13:55:00,006 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-01 13:55:01,915 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.09/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref * main_wf.anat_inho_cor_wf.InhoCorrection 2022-04-01 13:55:29,743 - INFO - [Node] Finished "main_wf.anat_inho_cor_wf.InhoCorrection". 2022-04-01 13:55:29,942 - INFO - [Job 8] Completed (main_wf.anat_inho_cor_wf.InhoCorrection). 2022-04-01 13:55:29,944 - INFO - [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.gen_bold_ref.gen_ref 2022-04-01 13:55:30,021 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.atlas_reg" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/atlas_reg". 2022-04-01 13:55:30,022 - INFO - [Node] Setting-up "main_wf.anat_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/anat_datasink". 2022-04-01 13:55:30,028 - INFO - [Node] Running "anat_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 13:55:30,032 - INFO - [Node] Setting-up "main_wf.anat_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/anat_inho_cor_diagnosis". 2022-04-01 13:55:30,032 - INFO - [Node] Finished "main_wf.anat_datasink". 2022-04-01 13:55:30,045 - INFO - [Node] Running "atlas_reg" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 13:55:30,047 - INFO - [Node] Running "anat_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 13:55:30,380 - INFO - [Node] Finished "main_wf.bold_main_wf.gen_bold_ref.gen_ref". 2022-04-01 13:55:31,944 - INFO - [Job 2] Completed (main_wf.bold_main_wf.gen_bold_ref.gen_ref). 2022-04-01 13:55:31,945 - INFO - [Job 39] Completed (main_wf.anat_datasink). 2022-04-01 13:55:31,947 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 167.49/169.69, Free processors: 78/80. Currently running: * main_wf.anat_inho_cor_diagnosis * main_wf.commonspace_reg_wf.atlas_reg 2022-04-01 13:55:32,036 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_hmc_wf.ants_MC" in "/rabies_out/main_wf/bold_main_wf/bold_hmc_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/ants_MC". 2022-04-01 13:55:32,040 - INFO - [Node] Running "ants_MC" ("rabies.preprocess_pkg.utils.antsMotionCorr") 2022-04-01 13:55:33,257 - INFO - [Node] Finished "main_wf.anat_inho_cor_diagnosis". 2022-04-01 13:55:33,946 - INFO - [Job 40] Completed (main_wf.anat_inho_cor_diagnosis). 2022-04-01 13:55:33,947 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.59/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC * main_wf.commonspace_reg_wf.atlas_reg 2022-04-01 13:57:08,551 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.atlas_reg". 2022-04-01 13:57:10,038 - INFO - [Job 9] Completed (main_wf.commonspace_reg_wf.atlas_reg). 2022-04-01 13:57:10,040 - INFO - [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.59/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-01 13:57:10,106 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/PlotOverlap_Native2Atlas". 2022-04-01 13:57:10,106 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.prep_commonspace_transform" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/prep_commonspace_transform". 2022-04-01 13:57:10,112 - INFO - [Node] Running "PlotOverlap_Native2Atlas" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-01 13:57:10,115 - INFO - [Node] Running "prep_commonspace_transform" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 13:57:10,651 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.prep_commonspace_transform". 2022-04-01 13:57:12,040 - INFO - [Job 11] Completed (main_wf.commonspace_reg_wf.prep_commonspace_transform). 2022-04-01 13:57:12,042 - INFO - [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.39/169.69, Free processors: 78/80. Currently running: * main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-01 13:57:12,111 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection" in "/rabies_out/main_wf/bold_main_wf/bold_inho_cor_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/InhoCorrection". 2022-04-01 13:57:12,117 - INFO - [Node] Running "InhoCorrection" ("rabies.preprocess_pkg.inho_correction.InhoCorrection") 2022-04-01 13:57:12,414 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas". 2022-04-01 13:57:14,042 - INFO - [Job 10] Completed (main_wf.commonspace_reg_wf.PlotOverlap_Native2Atlas). 2022-04-01 13:57:14,044 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.99/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection * main_wf.bold_main_wf.bold_hmc_wf.ants_MC 2022-04-01 14:02:43,539 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_hmc_wf.ants_MC". 2022-04-01 14:02:44,372 - INFO - [Job 3] Completed (main_wf.bold_main_wf.bold_hmc_wf.ants_MC). 2022-04-01 14:02:44,374 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 169.09/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection 2022-04-01 14:11:56,137 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection". 2022-04-01 14:11:56,927 - INFO - [Job 12] Completed (main_wf.bold_main_wf.bold_inho_cor_wf.InhoCorrection). 2022-04-01 14:11:56,928 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 14:11:56,993 - INFO - [Node] Setting-up "main_wf.bold_inho_cor_diagnosis" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/bold_inho_cor_diagnosis". 2022-04-01 14:11:56,993 - INFO - [Node] Setting-up "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration" in "/rabies_out/main_wf/bold_main_wf/cross_modal_reg_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/EPI_Coregistration". 2022-04-01 14:11:57,009 - INFO - [Node] Running "bold_inho_cor_diagnosis" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 14:11:57,010 - INFO - [Node] Running "EPI_Coregistration" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 14:11:58,929 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.49/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration * main_wf.bold_inho_cor_diagnosis 2022-04-01 14:12:00,257 - INFO - [Node] Finished "main_wf.bold_inho_cor_diagnosis". 2022-04-01 14:12:00,931 - INFO - [Job 13] Completed (main_wf.bold_inho_cor_diagnosis). 2022-04-01 14:12:00,932 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration 2022-04-01 14:12:11,488 - INFO - [Node] Finished "main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration". 2022-04-01 14:12:12,946 - INFO - [Job 14] Completed (main_wf.bold_main_wf.cross_modal_reg_wf.EPI_Coregistration). 2022-04-01 14:12:12,947 - INFO - [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 14:12:13,005 - INFO - [Node] Setting-up "main_wf.commonspace_reg_wf.transforms_datasink" in "/rabies_out/main_wf/commonspace_reg_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/transforms_datasink". 2022-04-01 14:12:13,005 - INFO - [Node] Setting-up "main_wf.PlotOverlap_EPI2Anat" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/PlotOverlap_EPI2Anat". 2022-04-01 14:12:13,006 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_to_commonspace_transforms" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/bold_to_commonspace_transforms". 2022-04-01 14:12:13,006 - INFO - [Node] Setting-up "main_wf.bold_main_wf.transforms_prep" in "/rabies_out/main_wf/bold_main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/transforms_prep". 2022-04-01 14:12:13,010 - INFO - [Node] Running "PlotOverlap_EPI2Anat" ("rabies.preprocess_pkg.preprocess_visual_QC.PlotOverlap") 2022-04-01 14:12:13,023 - INFO - [Node] Running "transforms_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 14:12:13,031 - INFO - [Node] Running "bold_to_commonspace_transforms" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 14:12:13,035 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_to_commonspace_transforms". 2022-04-01 14:12:13,045 - INFO - [Node] Running "transforms_prep" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 14:12:13,049 - INFO - [Node] Finished "main_wf.bold_main_wf.transforms_prep". 2022-04-01 14:12:13,050 - INFO - [Node] Finished "main_wf.commonspace_reg_wf.transforms_datasink". 2022-04-01 14:12:14,303 - INFO - [Node] Finished "main_wf.PlotOverlap_EPI2Anat". 2022-04-01 14:12:14,952 - INFO - [Job 15] Completed (main_wf.commonspace_reg_wf.transforms_datasink). 2022-04-01 14:12:14,953 - INFO - [Job 16] Completed (main_wf.PlotOverlap_EPI2Anat). 2022-04-01 14:12:14,953 - INFO - [Job 17] Completed (main_wf.bold_main_wf.bold_to_commonspace_transforms). 2022-04-01 14:12:14,954 - INFO - [Job 26] Completed (main_wf.bold_main_wf.transforms_prep). 2022-04-01 14:12:14,955 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 14:12:15,006 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/bold_transform". 2022-04-01 14:12:15,006 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/bold_transform". 2022-04-01 14:12:15,013 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-01 14:12:15,013 - INFO - [Node] Running "bold_transform" ("rabies.preprocess_pkg.utils.slice_applyTransforms") 2022-04-01 14:12:16,956 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.bold_transform * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:17:06,872 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.bold_transform". 2022-04-01 14:17:07,490 - INFO - [Job 27] Completed (main_wf.bold_main_wf.bold_native_trans_wf.bold_transform). 2022-04-01 14:17:07,491 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:17:07,561 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/merge". 2022-04-01 14:17:07,701 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-01 14:17:09,492 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 164.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.merge * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:17:41,116 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.merge". 2022-04-01 14:17:41,528 - INFO - [Job 28] Completed (main_wf.bold_main_wf.bold_native_trans_wf.merge). 2022-04-01 14:17:41,530 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:17:41,594 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/gen_bold_ref/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/gen_ref". 2022-04-01 14:17:41,613 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-01 14:17:43,531 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.69/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:18:08,205 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref". 2022-04-01 14:18:09,556 - INFO - [Job 29] Completed (main_wf.bold_main_wf.bold_native_trans_wf.gen_bold_ref.gen_ref). 2022-04-01 14:18:09,558 - INFO - [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:18:09,623 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/prop_labels_EPI". 2022-04-01 14:18:09,624 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/vascular_mask_EPI". 2022-04-01 14:18:09,624 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/CSF_mask_EPI". 2022-04-01 14:18:09,630 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:18:09,631 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:18:09,649 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/Brain_mask_EPI". 2022-04-01 14:18:09,637 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_native_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/WM_mask_EPI". 2022-04-01 14:18:09,652 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:18:09,659 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:18:09,659 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:18:10,167 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI". 2022-04-01 14:18:10,174 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI". 2022-04-01 14:18:10,175 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI". 2022-04-01 14:18:10,180 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI". 2022-04-01 14:18:10,434 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI". 2022-04-01 14:18:11,560 - INFO - [Job 30] Completed (main_wf.bold_main_wf.bold_native_trans_wf.prop_labels_EPI). 2022-04-01 14:18:11,561 - INFO - [Job 31] Completed (main_wf.bold_main_wf.bold_native_trans_wf.vascular_mask_EPI). 2022-04-01 14:18:11,562 - INFO - [Job 32] Completed (main_wf.bold_main_wf.bold_native_trans_wf.CSF_mask_EPI). 2022-04-01 14:18:11,563 - INFO - [Job 33] Completed (main_wf.bold_main_wf.bold_native_trans_wf.WM_mask_EPI). 2022-04-01 14:18:11,563 - INFO - [Job 34] Completed (main_wf.bold_main_wf.bold_native_trans_wf.Brain_mask_EPI). 2022-04-01 14:18:11,565 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:18:11,664 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds" in "/rabies_out/main_wf/bold_main_wf/bold_confs_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/estimate_confounds". 2022-04-01 14:18:11,715 - INFO - [Node] Running "estimate_confounds" ("rabies.preprocess_pkg.confounds.EstimateConfounds") 2022-04-01 14:18:13,562 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 166.39/169.69, Free processors: 78/80. Currently running: * main_wf.bold_main_wf.bold_confs_wf.estimate_confounds * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:20:29,335 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_confs_wf.estimate_confounds". 2022-04-01 14:20:29,731 - INFO - [Job 35] Completed (main_wf.bold_main_wf.bold_confs_wf.estimate_confounds). 2022-04-01 14:20:29,732 - INFO - [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:20:29,811 - INFO - [Node] Setting-up "main_wf.confounds_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/confounds_datasink". 2022-04-01 14:20:29,830 - INFO - [Node] Running "confounds_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 14:20:29,900 - INFO - [Node] Finished "main_wf.confounds_datasink". 2022-04-01 14:20:31,733 - INFO - [Job 36] Completed (main_wf.confounds_datasink). 2022-04-01 14:20:31,753 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform 2022-04-01 14:25:09,695 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform". 2022-04-01 14:25:10,084 - INFO - [Job 18] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.bold_transform). 2022-04-01 14:25:10,085 - INFO - [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 14:25:10,161 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/merge". 2022-04-01 14:25:10,348 - INFO - [Node] Running "merge" ("rabies.preprocess_pkg.utils.Merge") 2022-04-01 14:25:12,086 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.merge 2022-04-01 14:29:21,576 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.merge". 2022-04-01 14:29:22,492 - INFO - [Job 19] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.merge). 2022-04-01 14:29:22,494 - INFO - [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 14:29:22,549 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/gen_bold_ref/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/gen_ref". 2022-04-01 14:29:22,550 - INFO - [Node] Setting-up "main_wf.temporal_features" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/temporal_features". 2022-04-01 14:29:22,554 - INFO - [Node] Running "gen_ref" ("rabies.preprocess_pkg.utils.EstimateReferenceImage") 2022-04-01 14:29:22,581 - INFO - [Node] Running "temporal_features" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 14:29:24,495 - INFO - [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 167.49/169.69, Free processors: 78/80. Currently running: * main_wf.temporal_features * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-01 14:29:44,541 - INFO - [Node] Finished "main_wf.temporal_features". 2022-04-01 14:29:46,540 - INFO - [Job 37] Completed (main_wf.temporal_features). 2022-04-01 14:29:46,542 - INFO - [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 167.69/169.69, Free processors: 79/80. Currently running: * main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref 2022-04-01 14:30:47,212 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref". 2022-04-01 14:30:48,605 - INFO - [Job 20] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.gen_bold_ref.gen_ref). 2022-04-01 14:30:48,606 - INFO - [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 14:30:48,671 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/prop_labels_EPI". 2022-04-01 14:30:48,671 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/vascular_mask_EPI". 2022-04-01 14:30:48,672 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/CSF_mask_EPI". 2022-04-01 14:30:48,673 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/WM_mask_EPI". 2022-04-01 14:30:48,673 - INFO - [Node] Setting-up "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI" in "/rabies_out/main_wf/bold_main_wf/bold_commonspace_trans_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/Brain_mask_EPI". 2022-04-01 14:30:48,676 - INFO - [Node] Running "prop_labels_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:30:48,676 - INFO - [Node] Running "vascular_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:30:48,677 - INFO - [Node] Running "CSF_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:30:48,678 - INFO - [Node] Running "WM_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:30:48,678 - INFO - [Node] Running "Brain_mask_EPI" ("rabies.preprocess_pkg.resampling.MaskEPI") 2022-04-01 14:30:48,895 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI". 2022-04-01 14:30:48,932 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI". 2022-04-01 14:30:48,941 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI". 2022-04-01 14:30:48,953 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI". 2022-04-01 14:30:49,338 - INFO - [Node] Finished "main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI". 2022-04-01 14:30:50,611 - INFO - [Job 21] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.prop_labels_EPI). 2022-04-01 14:30:50,612 - INFO - [Job 22] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.vascular_mask_EPI). 2022-04-01 14:30:50,612 - INFO - [Job 23] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.CSF_mask_EPI). 2022-04-01 14:30:50,613 - INFO - [Job 24] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.WM_mask_EPI). 2022-04-01 14:30:50,614 - INFO - [Job 25] Completed (main_wf.bold_main_wf.bold_commonspace_trans_wf.Brain_mask_EPI). 2022-04-01 14:30:50,615 - INFO - [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80. 2022-04-01 14:30:50,681 - INFO - [Node] Setting-up "main_wf.bold_datasink" in "/rabies_out/main_wf/_scan_info_subject_id301109.sessionNone_split_name_sub-301109_T2w/_run_None/bold_datasink". 2022-04-01 14:30:50,713 - INFO - [Node] Running "bold_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 14:30:51,500 - INFO - [Node] Finished "main_wf.bold_datasink". 2022-04-01 14:30:52,614 - INFO - [Job 38] Completed (main_wf.bold_datasink). 2022-04-01 14:30:52,615 - INFO - [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 169.69/169.69, Free processors: 80/80.