2022-04-05 13:29:37,053 - INFO - Running RABIES - version: 0.3.5 2022-04-05 13:29:37,053 - INFO - CLI INPUTS: -> rabies_step = analysis -> plugin = Linear -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> confound_correction_out = /confound_out -> output_dir = /analysis_out -> output_name = analysis_wf -> scan_list = ['all'] -> seed_list = ['/roi_folder/ACA_l.nii.gz', '/roi_folder/CPu_l.nii.gz', '/roi_folder/MOp_l.nii.gz', '/roi_folder/S1bf_l.nii.gz'] -> seed_prior_list = [] -> prior_maps = /home/rabies/.local/share/rabies/melodic_IC.nii.gz -> prior_bold_idx = [5, 12, 19] -> prior_confound_idx = [0, 1, 2, 6, 7, 8, 9, 10, 11, 13, 14, 21, 22, 24, 26, 28, 29] -> data_diagnosis = False -> FC_matrix = True -> ROI_type = parcellated -> group_ICA = False -> dim = 0 -> melodic_random_seed = 1 -> DR_ICA = False -> dual_ICA = 0 2022-04-05 13:29:37,771 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-zr0htq0z because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-05 13:29:37,843 - INFO - Generating new fontManager, this may take some time... 2022-04-05 13:31:19,965 - INFO - Running workflow with Linear plugin. 2022-04-05 13:31:19,985 - INFO - Workflow confound_correction_wf_main_post_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-05 13:31:20,028 - INFO - Running serially. 2022-04-05 13:31:20,028 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf_outputnode" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-301609_task-rest_bold/confound_correction_wf_outputnode". 2022-04-05 13:31:20,041 - INFO - [Node] Running "confound_correction_wf_outputnode" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:31:20,057 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf_outputnode". 2022-04-05 13:31:20,058 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf.prep_CR" in "/analysis_out/confound_correction_wf_main_post_wf/confound_correction_wf/_split_name_sub-301609_task-rest_bold/prep_CR". 2022-04-05 13:31:20,077 - INFO - [Node] Running "prep_CR" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:31:38,100 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf.prep_CR". 2022-04-05 13:31:38,100 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf.regress" in "/analysis_out/confound_correction_wf_main_post_wf/confound_correction_wf/_split_name_sub-301609_task-rest_bold/regress". 2022-04-05 13:31:38,131 - INFO - [Node] Running "regress" ("rabies.conf_reg_pkg.confound_correction.Regress") 2022-04-05 13:46:50,379 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf.regress". 2022-04-05 13:46:50,379 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_prep_dict" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-301609_task-rest_bold/analysis_wf_prep_dict". 2022-04-05 13:46:50,505 - INFO - [Node] Running "analysis_wf_prep_dict" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:46:50,594 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_prep_dict". 2022-04-05 13:46:50,595 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_joinnode_main" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf_joinnode_main". 2022-04-05 13:46:50,708 - INFO - [Node] Running "analysis_wf_joinnode_main" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-05 13:46:50,786 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_joinnode_main". 2022-04-05 13:46:50,786 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_find_iterable" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-301609_task-rest_bold/analysis_wf_find_iterable". 2022-04-05 13:46:50,918 - INFO - [Node] Running "analysis_wf_find_iterable" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:46:50,996 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_find_iterable". 2022-04-05 13:46:50,996 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_read_dict" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-301609_task-rest_bold/analysis_wf_read_dict". 2022-04-05 13:46:51,112 - INFO - [Node] Running "analysis_wf_read_dict" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:46:51,168 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_read_dict". 2022-04-05 13:46:51,168 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_split_joinnode" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf_split_joinnode". 2022-04-05 13:46:51,187 - INFO - [Node] Running "analysis_wf_split_joinnode" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-05 13:46:51,190 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_split_joinnode". 2022-04-05 13:46:51,190 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-301609_task-rest_bold/_seed_name_S1bf_l/seed_based_FC". 2022-04-05 13:46:51,209 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:47:06,692 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-05 13:47:06,693 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-301609_task-rest_bold/_seed_name_MOp_l/seed_based_FC". 2022-04-05 13:47:06,714 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:47:22,102 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-05 13:47:22,102 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-301609_task-rest_bold/_seed_name_CPu_l/seed_based_FC". 2022-04-05 13:47:22,148 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:47:37,549 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-05 13:47:37,549 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-301609_task-rest_bold/_seed_name_ACA_l/seed_based_FC". 2022-04-05 13:47:37,599 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:47:53,022 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-05 13:47:53,023 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_FC_joinnode" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-301609_task-rest_bold/seed_FC_joinnode". 2022-04-05 13:47:53,060 - INFO - [Node] Running "seed_FC_joinnode" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-05 13:47:53,091 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_FC_joinnode". 2022-04-05 13:47:53,091 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.FC_matrix" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-301609_task-rest_bold/FC_matrix". 2022-04-05 13:47:53,120 - INFO - [Node] Running "FC_matrix" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 13:48:08,007 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.FC_matrix". 2022-04-05 13:48:08,007 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-301609_task-rest_bold/_seed_name_S1bf_l/analysis_wf_datasink". 2022-04-05 13:48:08,065 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 13:48:08,090 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-05 13:48:08,090 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-301609_task-rest_bold/_seed_name_MOp_l/analysis_wf_datasink". 2022-04-05 13:48:08,097 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 13:48:08,102 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-05 13:48:08,102 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-301609_task-rest_bold/_seed_name_CPu_l/analysis_wf_datasink". 2022-04-05 13:48:08,124 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 13:48:08,129 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-05 13:48:08,129 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-301609_task-rest_bold/_seed_name_ACA_l/analysis_wf_datasink". 2022-04-05 13:48:08,157 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 13:48:08,161 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-05 13:48:08,161 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-301609_task-rest_bold/confound_correction_wf_datasink". 2022-04-05 13:48:08,183 - INFO - [Node] Running "confound_correction_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 13:48:23,014 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf_datasink".