2022-04-05 06:17:02,196 - INFO - Running RABIES - version: 0.3.5 2022-04-05 06:17:02,196 - INFO - CLI INPUTS: -> rabies_step = analysis -> plugin = Linear -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> confound_correction_out = /confound_out -> output_dir = /analysis_out -> output_name = analysis_wf -> scan_list = ['all'] -> seed_list = ['/roi_folder/ACA_l.nii.gz', '/roi_folder/CPu_l.nii.gz', '/roi_folder/MOp_l.nii.gz', '/roi_folder/S1bf_l.nii.gz'] -> seed_prior_list = [] -> prior_maps = /home/rabies/.local/share/rabies/melodic_IC.nii.gz -> prior_bold_idx = [5, 12, 19] -> prior_confound_idx = [0, 1, 2, 6, 7, 8, 9, 10, 11, 13, 14, 21, 22, 24, 26, 28, 29] -> data_diagnosis = False -> FC_matrix = True -> ROI_type = parcellated -> group_ICA = False -> dim = 0 -> melodic_random_seed = 1 -> DR_ICA = False -> dual_ICA = 0 2022-04-05 06:17:02,921 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-eseywjcg because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-05 06:17:02,993 - INFO - Generating new fontManager, this may take some time... 2022-04-05 06:18:45,116 - INFO - Running workflow with Linear plugin. 2022-04-05 06:18:45,136 - INFO - Workflow confound_correction_wf_main_post_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-05 06:18:45,165 - INFO - Running serially. 2022-04-05 06:18:45,165 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf_outputnode" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300809_task-rest_bold/confound_correction_wf_outputnode". 2022-04-05 06:18:45,169 - INFO - [Node] Running "confound_correction_wf_outputnode" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:18:45,185 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf_outputnode". 2022-04-05 06:18:45,186 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf.prep_CR" in "/analysis_out/confound_correction_wf_main_post_wf/confound_correction_wf/_split_name_sub-300809_task-rest_bold/prep_CR". 2022-04-05 06:18:45,218 - INFO - [Node] Running "prep_CR" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:19:03,039 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf.prep_CR". 2022-04-05 06:19:03,039 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf.regress" in "/analysis_out/confound_correction_wf_main_post_wf/confound_correction_wf/_split_name_sub-300809_task-rest_bold/regress". 2022-04-05 06:19:03,057 - INFO - [Node] Running "regress" ("rabies.conf_reg_pkg.confound_correction.Regress") 2022-04-05 06:34:31,086 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf.regress". 2022-04-05 06:34:31,087 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_prep_dict" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300809_task-rest_bold/analysis_wf_prep_dict". 2022-04-05 06:34:31,206 - INFO - [Node] Running "analysis_wf_prep_dict" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:34:31,286 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_prep_dict". 2022-04-05 06:34:31,286 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_joinnode_main" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf_joinnode_main". 2022-04-05 06:34:31,404 - INFO - [Node] Running "analysis_wf_joinnode_main" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-05 06:34:31,483 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_joinnode_main". 2022-04-05 06:34:31,484 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_find_iterable" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300809_task-rest_bold/analysis_wf_find_iterable". 2022-04-05 06:34:31,603 - INFO - [Node] Running "analysis_wf_find_iterable" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:34:31,682 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_find_iterable". 2022-04-05 06:34:31,682 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_read_dict" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300809_task-rest_bold/analysis_wf_read_dict". 2022-04-05 06:34:31,798 - INFO - [Node] Running "analysis_wf_read_dict" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:34:31,855 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_read_dict". 2022-04-05 06:34:31,855 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_split_joinnode" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf_split_joinnode". 2022-04-05 06:34:31,858 - INFO - [Node] Running "analysis_wf_split_joinnode" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-05 06:34:31,861 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_split_joinnode". 2022-04-05 06:34:31,861 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300809_task-rest_bold/_seed_name_S1bf_l/seed_based_FC". 2022-04-05 06:34:31,865 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:34:47,636 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-05 06:34:47,637 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300809_task-rest_bold/_seed_name_MOp_l/seed_based_FC". 2022-04-05 06:34:47,643 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:35:03,366 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-05 06:35:03,367 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300809_task-rest_bold/_seed_name_CPu_l/seed_based_FC". 2022-04-05 06:35:03,371 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:35:19,159 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-05 06:35:19,160 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300809_task-rest_bold/_seed_name_ACA_l/seed_based_FC". 2022-04-05 06:35:19,165 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:35:34,937 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-05 06:35:34,938 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_FC_joinnode" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300809_task-rest_bold/seed_FC_joinnode". 2022-04-05 06:35:34,943 - INFO - [Node] Running "seed_FC_joinnode" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-05 06:35:34,946 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_FC_joinnode". 2022-04-05 06:35:34,947 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.FC_matrix" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300809_task-rest_bold/FC_matrix". 2022-04-05 06:35:34,953 - INFO - [Node] Running "FC_matrix" ("nipype.interfaces.utility.wrappers.Function") 2022-04-05 06:35:50,129 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.FC_matrix". 2022-04-05 06:35:50,129 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300809_task-rest_bold/_seed_name_S1bf_l/analysis_wf_datasink". 2022-04-05 06:35:50,134 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 06:35:50,139 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-05 06:35:50,139 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300809_task-rest_bold/_seed_name_MOp_l/analysis_wf_datasink". 2022-04-05 06:35:50,144 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 06:35:50,147 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-05 06:35:50,148 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300809_task-rest_bold/_seed_name_CPu_l/analysis_wf_datasink". 2022-04-05 06:35:50,153 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 06:35:50,157 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-05 06:35:50,157 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300809_task-rest_bold/_seed_name_ACA_l/analysis_wf_datasink". 2022-04-05 06:35:50,161 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 06:35:50,165 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-05 06:35:50,165 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300809_task-rest_bold/confound_correction_wf_datasink". 2022-04-05 06:35:50,170 - INFO - [Node] Running "confound_correction_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-05 06:36:04,485 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf_datasink".