2022-04-04 09:38:24,025 - INFO - Running RABIES - version: 0.3.5 2022-04-04 09:38:24,025 - INFO - CLI INPUTS: -> rabies_step = analysis -> plugin = Linear -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> confound_correction_out = /confound_out -> output_dir = /analysis_out -> output_name = analysis_wf -> scan_list = ['all'] -> seed_list = ['/roi_folder/ACA_l.nii.gz', '/roi_folder/CPu_l.nii.gz', '/roi_folder/MOp_l.nii.gz', '/roi_folder/S1bf_l.nii.gz'] -> seed_prior_list = [] -> prior_maps = /home/rabies/.local/share/rabies/melodic_IC.nii.gz -> prior_bold_idx = [5, 12, 19] -> prior_confound_idx = [0, 1, 2, 6, 7, 8, 9, 10, 11, 13, 14, 21, 22, 24, 26, 28, 29] -> data_diagnosis = False -> FC_matrix = True -> ROI_type = parcellated -> group_ICA = False -> dim = 0 -> melodic_random_seed = 1 -> DR_ICA = False -> dual_ICA = 0 2022-04-04 09:38:24,687 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-2sjy3yl3 because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-04 09:38:24,750 - INFO - Generating new fontManager, this may take some time... 2022-04-04 09:40:06,727 - INFO - Running workflow with Linear plugin. 2022-04-04 09:40:06,747 - INFO - Workflow confound_correction_wf_main_post_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-04 09:40:06,776 - INFO - Running serially. 2022-04-04 09:40:06,777 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf_outputnode" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300402_task-rest_bold/confound_correction_wf_outputnode". 2022-04-04 09:40:06,781 - INFO - [Node] Running "confound_correction_wf_outputnode" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:40:06,798 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf_outputnode". 2022-04-04 09:40:06,799 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf.prep_CR" in "/analysis_out/confound_correction_wf_main_post_wf/confound_correction_wf/_split_name_sub-300402_task-rest_bold/prep_CR". 2022-04-04 09:40:06,803 - INFO - [Node] Running "prep_CR" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:40:23,085 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf.prep_CR". 2022-04-04 09:40:23,086 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf.regress" in "/analysis_out/confound_correction_wf_main_post_wf/confound_correction_wf/_split_name_sub-300402_task-rest_bold/regress". 2022-04-04 09:40:23,107 - INFO - [Node] Running "regress" ("rabies.conf_reg_pkg.confound_correction.Regress") 2022-04-04 09:43:29,439 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf.regress". 2022-04-04 09:43:29,451 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_prep_dict" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300402_task-rest_bold/analysis_wf_prep_dict". 2022-04-04 09:43:29,667 - INFO - [Node] Running "analysis_wf_prep_dict" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:43:29,744 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_prep_dict". 2022-04-04 09:43:29,745 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_joinnode_main" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf_joinnode_main". 2022-04-04 09:43:29,861 - INFO - [Node] Running "analysis_wf_joinnode_main" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-04 09:43:29,939 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_joinnode_main". 2022-04-04 09:43:29,939 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_find_iterable" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300402_task-rest_bold/analysis_wf_find_iterable". 2022-04-04 09:43:30,054 - INFO - [Node] Running "analysis_wf_find_iterable" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:43:30,131 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_find_iterable". 2022-04-04 09:43:30,131 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_read_dict" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300402_task-rest_bold/analysis_wf_read_dict". 2022-04-04 09:43:30,244 - INFO - [Node] Running "analysis_wf_read_dict" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:43:30,299 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_read_dict". 2022-04-04 09:43:30,299 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_split_joinnode" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf_split_joinnode". 2022-04-04 09:43:30,302 - INFO - [Node] Running "analysis_wf_split_joinnode" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-04 09:43:30,305 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_split_joinnode". 2022-04-04 09:43:30,305 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300402_task-rest_bold/_seed_name_S1bf_l/seed_based_FC". 2022-04-04 09:43:30,309 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:43:45,014 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-04 09:43:45,015 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300402_task-rest_bold/_seed_name_MOp_l/seed_based_FC". 2022-04-04 09:43:45,020 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:43:59,597 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-04 09:43:59,597 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300402_task-rest_bold/_seed_name_CPu_l/seed_based_FC". 2022-04-04 09:43:59,602 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:44:14,148 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-04 09:44:14,148 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300402_task-rest_bold/_seed_name_ACA_l/seed_based_FC". 2022-04-04 09:44:14,154 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:44:28,792 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-04 09:44:28,793 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_FC_joinnode" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300402_task-rest_bold/seed_FC_joinnode". 2022-04-04 09:44:28,798 - INFO - [Node] Running "seed_FC_joinnode" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-04 09:44:28,801 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_FC_joinnode". 2022-04-04 09:44:28,802 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.FC_matrix" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300402_task-rest_bold/FC_matrix". 2022-04-04 09:44:28,806 - INFO - [Node] Running "FC_matrix" ("nipype.interfaces.utility.wrappers.Function") 2022-04-04 09:44:42,873 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.FC_matrix". 2022-04-04 09:44:42,873 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300402_task-rest_bold/_seed_name_S1bf_l/analysis_wf_datasink". 2022-04-04 09:44:42,878 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 09:44:42,883 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-04 09:44:42,883 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300402_task-rest_bold/_seed_name_MOp_l/analysis_wf_datasink". 2022-04-04 09:44:42,888 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 09:44:42,892 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-04 09:44:42,892 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300402_task-rest_bold/_seed_name_CPu_l/analysis_wf_datasink". 2022-04-04 09:44:42,896 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 09:44:42,900 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-04 09:44:42,900 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300402_task-rest_bold/_seed_name_ACA_l/analysis_wf_datasink". 2022-04-04 09:44:42,905 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 09:44:42,909 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-04 09:44:42,909 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300402_task-rest_bold/confound_correction_wf_datasink". 2022-04-04 09:44:42,914 - INFO - [Node] Running "confound_correction_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-04 09:44:53,338 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf_datasink".