2022-04-01 12:22:36,179 - INFO - Running RABIES - version: 0.3.5 2022-04-01 12:22:36,179 - INFO - CLI INPUTS: -> rabies_step = analysis -> plugin = Linear -> local_threads = 80 -> scale_min_memory = 1.0 -> min_proc = 1 -> confound_correction_out = /confound_out -> output_dir = /analysis_out -> output_name = analysis_wf -> scan_list = ['all'] -> seed_list = ['/roi_folder/ACA_l.nii.gz', '/roi_folder/CPu_l.nii.gz', '/roi_folder/MOp_l.nii.gz', '/roi_folder/S1bf_l.nii.gz'] -> seed_prior_list = [] -> prior_maps = /home/rabies/.local/share/rabies/melodic_IC.nii.gz -> prior_bold_idx = [5, 12, 19] -> prior_confound_idx = [0, 1, 2, 6, 7, 8, 9, 10, 11, 13, 14, 21, 22, 24, 26, 28, 29] -> data_diagnosis = False -> FC_matrix = True -> ROI_type = parcellated -> group_ICA = False -> dim = 0 -> melodic_random_seed = 1 -> DR_ICA = False -> dual_ICA = 0 2022-04-01 12:22:36,895 - WARNING - Matplotlib created a temporary config/cache directory at /tmp/matplotlib-c23rr8j2 because the default path (/home/m/mchakrav/gjoanes/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. 2022-04-01 12:22:36,961 - INFO - Generating new fontManager, this may take some time... 2022-04-01 12:24:19,072 - INFO - Running workflow with Linear plugin. 2022-04-01 12:24:19,093 - INFO - Workflow confound_correction_wf_main_post_wf settings: ['check', 'execution', 'logging', 'monitoring'] 2022-04-01 12:24:19,123 - INFO - Running serially. 2022-04-01 12:24:19,123 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf_outputnode" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300307_task-rest_bold/confound_correction_wf_outputnode". 2022-04-01 12:24:19,127 - INFO - [Node] Running "confound_correction_wf_outputnode" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:24:19,145 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf_outputnode". 2022-04-01 12:24:19,145 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf.prep_CR" in "/analysis_out/confound_correction_wf_main_post_wf/confound_correction_wf/_split_name_sub-300307_task-rest_bold/prep_CR". 2022-04-01 12:24:19,150 - INFO - [Node] Running "prep_CR" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:24:36,857 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf.prep_CR". 2022-04-01 12:24:36,858 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf.regress" in "/analysis_out/confound_correction_wf_main_post_wf/confound_correction_wf/_split_name_sub-300307_task-rest_bold/regress". 2022-04-01 12:24:36,880 - INFO - [Node] Running "regress" ("rabies.conf_reg_pkg.confound_correction.Regress") 2022-04-01 12:27:43,261 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf.regress". 2022-04-01 12:27:43,261 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_prep_dict" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300307_task-rest_bold/analysis_wf_prep_dict". 2022-04-01 12:27:43,498 - INFO - [Node] Running "analysis_wf_prep_dict" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:27:43,576 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_prep_dict". 2022-04-01 12:27:43,576 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_joinnode_main" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf_joinnode_main". 2022-04-01 12:27:43,691 - INFO - [Node] Running "analysis_wf_joinnode_main" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-01 12:27:43,767 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_joinnode_main". 2022-04-01 12:27:43,767 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_find_iterable" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300307_task-rest_bold/analysis_wf_find_iterable". 2022-04-01 12:27:43,884 - INFO - [Node] Running "analysis_wf_find_iterable" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:27:43,960 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_find_iterable". 2022-04-01 12:27:43,961 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_read_dict" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300307_task-rest_bold/analysis_wf_read_dict". 2022-04-01 12:27:44,084 - INFO - [Node] Running "analysis_wf_read_dict" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:27:44,141 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_read_dict". 2022-04-01 12:27:44,142 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_split_joinnode" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf_split_joinnode". 2022-04-01 12:27:44,146 - INFO - [Node] Running "analysis_wf_split_joinnode" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-01 12:27:44,149 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_split_joinnode". 2022-04-01 12:27:44,149 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300307_task-rest_bold/_seed_name_S1bf_l/seed_based_FC". 2022-04-01 12:27:44,154 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:28:00,156 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-01 12:28:00,157 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300307_task-rest_bold/_seed_name_MOp_l/seed_based_FC". 2022-04-01 12:28:00,163 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:28:15,499 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-01 12:28:15,499 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300307_task-rest_bold/_seed_name_CPu_l/seed_based_FC". 2022-04-01 12:28:15,505 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:28:30,771 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-01 12:28:30,771 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300307_task-rest_bold/_seed_name_ACA_l/seed_based_FC". 2022-04-01 12:28:30,776 - INFO - [Node] Running "seed_based_FC" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:28:46,004 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_based_FC". 2022-04-01 12:28:46,005 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.seed_FC_joinnode" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300307_task-rest_bold/seed_FC_joinnode". 2022-04-01 12:28:46,011 - INFO - [Node] Running "seed_FC_joinnode" ("nipype.interfaces.utility.base.IdentityInterface") 2022-04-01 12:28:46,014 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.seed_FC_joinnode". 2022-04-01 12:28:46,015 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf.FC_matrix" in "/analysis_out/confound_correction_wf_main_post_wf/analysis_wf/_scan_split_name_sub-300307_task-rest_bold/FC_matrix". 2022-04-01 12:28:46,019 - INFO - [Node] Running "FC_matrix" ("nipype.interfaces.utility.wrappers.Function") 2022-04-01 12:29:00,686 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf.FC_matrix". 2022-04-01 12:29:00,686 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300307_task-rest_bold/_seed_name_S1bf_l/analysis_wf_datasink". 2022-04-01 12:29:00,691 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 12:29:00,697 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-01 12:29:00,697 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300307_task-rest_bold/_seed_name_MOp_l/analysis_wf_datasink". 2022-04-01 12:29:00,702 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 12:29:00,706 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-01 12:29:00,706 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300307_task-rest_bold/_seed_name_CPu_l/analysis_wf_datasink". 2022-04-01 12:29:00,711 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 12:29:00,714 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-01 12:29:00,714 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.analysis_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_scan_split_name_sub-300307_task-rest_bold/_seed_name_ACA_l/analysis_wf_datasink". 2022-04-01 12:29:00,720 - INFO - [Node] Running "analysis_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 12:29:00,723 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.analysis_wf_datasink". 2022-04-01 12:29:00,723 - INFO - [Node] Setting-up "confound_correction_wf_main_post_wf.confound_correction_wf_datasink" in "/analysis_out/confound_correction_wf_main_post_wf/_split_name_sub-300307_task-rest_bold/confound_correction_wf_datasink". 2022-04-01 12:29:00,730 - INFO - [Node] Running "confound_correction_wf_datasink" ("nipype.interfaces.io.DataSink") 2022-04-01 12:29:11,922 - INFO - [Node] Finished "confound_correction_wf_main_post_wf.confound_correction_wf_datasink".