function make_dice_coeff_plots

project_dir = pwd;

cd([project_dir '/supplementary_material/dice_coeff_numk_does_not_matter/dice_coefficient'])

load('dice_coeff.mat')

%%
figure; bar(similarity_1_2)

xlabel('branch numbers','FontName', 'AvenierNext', 'FontSize', 26, 'FontWeight','normal')
ylabel('dice coefficient','FontName', 'AvenierNext', 'FontSize', 26, 'FontWeight','normal')

% add average line
mu = mean(similarity_1_2);
hold on; xl = get(gca, 'XLim'); plot(xl, [mu, mu], 'r','LineWidth',3)

% add chance line
chance = 0.125;
hold on; xl = get(gca, 'XLim'); plot(xl, [chance, chance], 'k--','LineWidth',3)

xt = get(gca, 'XTick');
set(gca, 'FontSize', 24)
box off

%%
figure; bar(similarity_2_3)

xlabel('branch numbers','FontName', 'AvenierNext', 'FontSize', 26, 'FontWeight','normal')
ylabel('dice coefficient','FontName', 'AvenierNext', 'FontSize', 26, 'FontWeight','normal')

% add average line
mu = mean(similarity_2_3);
hold on; xl = get(gca, 'XLim'); plot(xl, [mu, mu], 'r','LineWidth',3)

% add chance line
chance = 0.125;
hold on; xl = get(gca, 'XLim'); plot(xl, [chance, chance], 'k--','LineWidth',3)

xt = get(gca, 'XTick');
set(gca, 'FontSize', 24)
ylim([0 1])
box off

%%
figure; bar(similarity_1_3)

xlabel('branch numbers','FontName', 'AvenierNext', 'FontSize', 26, 'FontWeight','normal')
ylabel('dice coefficient','FontName', 'AvenierNext', 'FontSize', 26, 'FontWeight','normal')

% add average line
mu = mean(similarity_1_3);
hold on; xl = get(gca, 'XLim'); plot(xl, [mu, mu], 'r','LineWidth',3)

% add chance line
chance = 0.125;
hold on; xl = get(gca, 'XLim'); plot(xl, [chance, chance], 'k--','LineWidth',3)

xt = get(gca, 'XTick');
set(gca, 'FontSize', 24)
ylim([0 1])
box off

%%
cd(project_dir)
end
